View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13952_low_4 (Length: 453)
Name: NF13952_low_4
Description: NF13952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13952_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Original strand, 23915752 - 23916184
Alignment:
| Q |
19 |
gggttgttgtattgaatgttagagggttgaattttcttgatttcatttttgatcaactgaggttgctttctcatttgatgtctcaacaattgatgatgta |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23915752 |
gggttgttgtattgaatgttagagggttgaattttcttgatttcatttttgatcaactgaggttgctttctcatttgatgtctcaacaattgatgatgta |
23915851 |
T |
|
| Q |
119 |
gatgggtgctatttcataattattaagaatggattgttgtttatgcttgatttctccttttgttccttatatatcacaattgtattagtttggtctctaa |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23915852 |
gatgggtgctatttcataattattaagaatggattgttgtttatgcttgatttctccttttgttccttatatatcacaattgtattagtttggtctctaa |
23915951 |
T |
|
| Q |
219 |
attctaatcgtgagagttgagtccctgttttgatctcctggtagtgttattttttccaatcggttgaaataaacttccaaattcctctttgattcatgat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23915952 |
attctaatcgtgagagttgagtccctgttttgatctcctggtagtgttattttttccaatcggttgaaataaacttccaaattcctctttgattcatgat |
23916051 |
T |
|
| Q |
319 |
tctaataaaagttgtgatactttaattttcaagctccctctaattgttccttc-nnnnnnnnnnntgctccctctaattgtgaatgtgtgtatggacttt |
417 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
23916052 |
tctaataaaagttgtgatactttaattttcaagctccctctaattgttccttcaaaaaaaaaaaatgctccctctaattgtgaatgcgtgtatggacttt |
23916151 |
T |
|
| Q |
418 |
ttagaccaagtaagcaagcaccatagacctatg |
450 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
23916152 |
ttagaccaagtaagcaagcaccatagacctatg |
23916184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 18989770 - 18989337
Alignment:
| Q |
19 |
gggttgttgtattgaatgttagagggttgaattttcttgatttcatttttgatcaactgaggttgctttctcatttgatgtctcaacaattgatgatgta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
18989770 |
gggttgttgtattgaatgttagagggttgaattttcttgatttcatttttgatcaactgaggttgctttctcatttgatgtctcaacaattggtgatgta |
18989671 |
T |
|
| Q |
119 |
gatgggtgctatttcataattattaagaatggattgttgtttatgcttgatttctccttttgttccttatatatcacaattgtattagtttggtctctaa |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18989670 |
gatgggtgctatttcataattattaagaatggattgttgtttatgcttgatttctccttctgttccttatatatcacaattgtattagtttggtctctaa |
18989571 |
T |
|
| Q |
219 |
attctaatcgtgagagttgagtccctgttttgatctcctggtagtgttattttttccaatcggttgaaataaacttccaaattcctctttgattcatgat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18989570 |
attctaatcgtgagagttgagtccctgttttgatctcctggtagtgttattttttccaatcggttgaaataaacttccaaattcctctttgattcatgat |
18989471 |
T |
|
| Q |
319 |
tctaataaaagttgtgatactttaattttcaagctccctctaattgttccttc--nnnnnnnnnnntgctccctctaattgtgaatgtgtgtatggactt |
416 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
18989470 |
tctaataaaagttttgatactttaattttcaagctccctctaattgttccttcaaaaaaaaaaaaaagctccctctaattgtgaatgcgtgtatggactt |
18989371 |
T |
|
| Q |
417 |
tttagaccaagtaagcaagcaccatagacctatg |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
18989370 |
tttagaccaagtaagcaagcaccatagacctatg |
18989337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 129 - 450
Target Start/End: Original strand, 30340059 - 30340383
Alignment:
| Q |
129 |
atttcataattattaagaatggattgttgtttatgcttgatttctccttttgttccttatatatcacaattgtattagtttggtctctaaattctaatcg |
228 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
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|
| T |
30340059 |
atttcaaaattattaagaatggattgttgtttatgcttgattgctccttttgttccttatagatcacaattgtattagtttggtctctaaattctaattg |
30340158 |
T |
|
| Q |
229 |
tgagagttgagtccctgttttgatctcctggtagtgttattttttccaatcggttgaaataaacttccaaattcctctttgattcatgattctaataaaa |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
30340159 |
tgagagttgagtccctgttttgatctcctggtagtgttattttttcgaatcggttgaaatgcgcttccaaattcctctttgattcatgattctaatcaaa |
30340258 |
T |
|
| Q |
329 |
gttgtgatactttaattttcaagctccctctaattgttccttc---nnnnnnnnnnntgctccctctaattgtgaatgtgtgtatggactttttagacca |
425 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
30340259 |
attgtgatactttaattttcatgctccctctaattgttccttcaaaaaaaaaaaaaatgctccctctaattgtgaatgcgtgtatggactttttagacca |
30340358 |
T |
|
| Q |
426 |
agtaagcaagcaccatagacctatg |
450 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
30340359 |
agtaagcaagcaccatagacctatg |
30340383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 30338703 - 30338768
Alignment:
| Q |
19 |
gggttgttgtattgaatgttagagggttgaattttcttgatttcatttttgatcaactgaggttgc |
84 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30338703 |
gggttgttgtattgaattttagagggttgaattttcttgatttcatttttgatcaactgaggttgc |
30338768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 30339163 - 30339219
Alignment:
| Q |
79 |
ggttgctttctcatttgatgtctcaacaattgatgatgtagatgggtgctatttcat |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30339163 |
ggttgctttctcatttgatgtctcaacaattgatgatgtagatgggtgctatttcat |
30339219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 26164643 - 26164577
Alignment:
| Q |
19 |
gggttgttgtattgaatgttagagggttgaa-ttttcttgatttcatttttgatcaactgaggttgc |
84 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| || |||||| |
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|
| T |
26164643 |
gggttgttgtattgaaggttagagggttgaatttttcttgatttcatttttgatcaattgtggttgc |
26164577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 26164091 - 26164050
Alignment:
| Q |
79 |
ggttgctttctcatttgatgtctcaacaattgatgatgtaga |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26164091 |
ggttgctttctcatttgatgtctcaacaattgatgatgtaga |
26164050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 133 - 270
Target Start/End: Complemental strand, 54435010 - 54434868
Alignment:
| Q |
133 |
cataattattaagaatggattgttgtttatgctt-gatttctccttttgttccttatatatcacaattgtattagtttggtctctaaattctaa----tc |
227 |
Q |
| |
|
||||||||||||||||||||| ||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
54435010 |
cataattattaagaatggatttttgtttatgttttgattgtaccttttgttccttatatatcacaattgtattagtttggtctctaaattctaattattt |
54434911 |
T |
|
| Q |
228 |
gtgagagttgagtccctgttttgatctcctggtagtgttattt |
270 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||| |
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|
| T |
54434910 |
atgagagttgagtccctattttgatctcctggtactgttattt |
54434868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 300 - 366
Target Start/End: Complemental strand, 54434869 - 54434804
Alignment:
| Q |
300 |
ttcctctttgattcatgattctaataaaagttgtgatactttaattttcaagctccctctaattgtt |
366 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||| |
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|
| T |
54434869 |
ttcctctttgattcatgattctaatcaa-gttgtgatactttaattttcatgctccctctaattgtt |
54434804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 383 - 450
Target Start/End: Complemental strand, 54434820 - 54434751
Alignment:
| Q |
383 |
tgctccctctaattgtgaatgtgtgtat--ggactttttagaccaagtaagcaagcaccatagacctatg |
450 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
54434820 |
tgctccctctaattgttgatgcgtgtatatggactttttagaccaagtaagcaagcaccttagacctatg |
54434751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 17732599 - 17732635
Alignment:
| Q |
84 |
ctttctcatttgatgtctcaacaattgatgatgtaga |
120 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
17732599 |
ctttctcatttgatgtctcaacaattcatgatataga |
17732635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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