View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13952_low_8 (Length: 238)
Name: NF13952_low_8
Description: NF13952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13952_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 52726754 - 52726955
Alignment:
| Q |
21 |
cttgttaacaaaataactaaagttcagtccttgggggatatctgataaaattggaacaatgcagagaaaatagctaaagttcaacctagccaatcccnnn |
120 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52726754 |
cttgttaacaaaataactaaagttcagtccttaggggatatctgataaaattggaacaatgcagagaaaatagctaaagttcaacctagccaatcccaaa |
52726853 |
T |
|
| Q |
121 |
nnnnnnnnnnnnnnnnnnnnntgcatgcaacccggctaatgaaacaagtacattagaaaacatataaattttcctcagttgctgaagtaattacgagggg |
220 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52726854 |
aaaagaaaagaaaaagaaaagtgcatgcaacccggctaatgaaacaagtacattaggaaacatataaattttcctcagttgctgaagtaattacgagggg |
52726953 |
T |
|
| Q |
221 |
ag |
222 |
Q |
| |
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|| |
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| T |
52726954 |
ag |
52726955 |
T |
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