View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13953_high_1 (Length: 677)
Name: NF13953_high_1
Description: NF13953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13953_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 11 - 477
Target Start/End: Complemental strand, 9998507 - 9998041
Alignment:
| Q |
11 |
gagagagatgaatttggagtacaaaacatctaaccaaacatgtgttagatgtatgtttggtatcacgatggatatattatatatcagaactacggtgatt |
110 |
Q |
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| T |
9998507 |
gagagacatgaatttggggtacaaaacatctaaccaaacatgtgttagatgtatgtttggtatcacgatggatatattatatatcagaactacggtgatt |
9998408 |
T |
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| Q |
111 |
tgttgtgattttgcataagctacaacgataagtcatcataattctcacacacttaccgtgatattaaacatagaccaagagtagtgggagtgtgagaata |
210 |
Q |
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| T |
9998407 |
tgtcgtgattttgcataagctacaacgataagtcatcataattctcacacacttaccgtgatatcaaacatagactaagagtagtgggagtgtgagaata |
9998308 |
T |
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| Q |
211 |
ttgatacttatctttaatagatgagtttgacttctgtaggaggtaaaaacttttaaattaatcaatggtgattcagtgatcaagaatgttggctgaattg |
310 |
Q |
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| T |
9998307 |
ttgatacttatctttaatatatgagtttgacttctgtaggaggtaaaaacttttaaattaatcaatggtgattcagtgatcaagaatgttggctgaattg |
9998208 |
T |
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| Q |
311 |
gagcagcgttttgtcaagtttggatgttataacatagcaaagagttgctataaaaatattttgtgcttgttctttattttgcccttttcacttataagaa |
410 |
Q |
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| T |
9998207 |
gagcagcgttttgtcaagtttggatgttataacatagcaaagagttgctataaaaatattttgtgcttgttctttattttgcccttttcacttataagaa |
9998108 |
T |
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| Q |
411 |
gaagtgattctgctaagataagagagaatgggagttggtgagtttctatttccgttaatatctatca |
477 |
Q |
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| T |
9998107 |
gaagtgattctgctaagataagagagaaggggagttggtgagtttctatttccgttaatatctatca |
9998041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 544 - 658
Target Start/End: Complemental strand, 9997974 - 9997860
Alignment:
| Q |
544 |
cttgcatgatcaaacgcaagtgtagcatttgataattctagacaacaaattttcttgttcacttcaaaatcgttttctaaagtatactaatagctagttt |
643 |
Q |
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| T |
9997974 |
cttgcatgatcaaacgcaagtgtagcatttgataattctagacaacaaattttcttgttcacttcaaaatcgttttctaaagtatactaatagctagttt |
9997875 |
T |
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| Q |
644 |
tcggtaacacccatg |
658 |
Q |
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| T |
9997874 |
tcggtaacacccatg |
9997860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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