View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13953_high_2 (Length: 484)

Name: NF13953_high_2
Description: NF13953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13953_high_2
NF13953_high_2
[»] chr2 (5 HSPs)
chr2 (111-456)||(15916246-15916591)
chr2 (227-425)||(5539775-5539974)
chr2 (133-420)||(36400391-36400679)
chr2 (39-92)||(15916144-15916197)
chr2 (254-305)||(33007695-33007746)
[»] chr4 (3 HSPs)
chr4 (130-459)||(18991844-18992171)
chr4 (272-424)||(48489152-48489305)
chr4 (227-387)||(5786302-5786463)
[»] chr5 (1 HSPs)
chr5 (252-396)||(16160225-16160370)
[»] chr3 (5 HSPs)
chr3 (256-421)||(3159565-3159731)
chr3 (252-305)||(15206039-15206092)
chr3 (252-305)||(15245105-15245158)
chr3 (360-424)||(43858166-43858230)
chr3 (234-290)||(53505566-53505622)
[»] chr8 (4 HSPs)
chr8 (256-424)||(38245935-38246104)
chr8 (256-420)||(24788458-24788623)
chr8 (283-418)||(12867874-12868010)
chr8 (254-314)||(38921179-38921239)
[»] scaffold0259 (1 HSPs)
scaffold0259 (254-455)||(4074-4276)
[»] chr7 (7 HSPs)
chr7 (227-387)||(13760851-13761011)
chr7 (256-424)||(13807900-13808069)
chr7 (227-387)||(35768908-35769069)
chr7 (360-460)||(19480646-19480746)
chr7 (360-424)||(1718411-1718475)
chr7 (254-301)||(9598590-9598637)
chr7 (254-301)||(9826161-9826208)
[»] chr1 (5 HSPs)
chr1 (285-424)||(14207304-14207444)
chr1 (362-431)||(41514227-41514296)
chr1 (360-424)||(46269094-46269158)
chr1 (254-305)||(22157819-22157870)
chr1 (252-308)||(31403960-31404016)
[»] chr6 (7 HSPs)
chr6 (294-424)||(19229381-19229512)
chr6 (363-425)||(8233945-8234007)
chr6 (256-420)||(3296888-3297053)
chr6 (248-292)||(24395694-24395738)
chr6 (253-299)||(21605318-21605364)
chr6 (360-424)||(11466915-11466979)
chr6 (248-292)||(18970907-18970951)
[»] scaffold0074 (1 HSPs)
scaffold0074 (248-292)||(25778-25822)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 111 - 456
Target Start/End: Original strand, 15916246 - 15916591
Alignment:
Q  111 cattgtgatagcccatgagctctggtctaatatgagaaattggttaggtatctcattggtgccttctgatgagtttcgacgcccttttatttagttcatc 210  Q
    |||||||||||||||||||||||| ||||||||| | ||||||||||||||||||| |||||||||| ||||||||||| | | ||||||||||||||||    
T  15916246 cattgtgatagcccatgagctctgatctaatatgtggaattggttaggtatctcatcggtgccttctaatgagtttcgatgtcattttatttagttcatc 15916345  T
Q  211 aaaatgacgggtttgtcaagaatttctcatttatatataacgataatttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgtatttt 310  Q
    |||||||  ||||||||||||||||||||||||||| ||||||||||||| ||||||| | ||||| |||||| |||||||| |||||| |||||||||     
T  15916346 aaaatgataggtttgtcaagaatttctcatttatatttaacgataatttgatttgcaactctttgggtgatttagaaggaaatgaacaatcgtgtatttc 15916445  T
Q  311 aaaatgcggtgtccactccttttattctcattaaaaaagttaagtttaatcttttttatggttgaaatctaaacaggcggcctttggttatacttaccat 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||    
T  15916446 aaaatgcggtgtccactccttttattctcattaaaaaagttaagtttaatctttcttatggttgaaatctaaacagacggcctttggttataattaccat 15916545  T
Q  411 gactggtggaaacatttgttgctttggatgtgtgttcacttgtaat 456  Q
    || |||| |||||||||||||||||| ||| ||||||| |||||||    
T  15916546 gattggtagaaacatttgttgctttgtatgggtgttcatttgtaat 15916591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 425
Target Start/End: Original strand, 5539775 - 5539974
Alignment:
Q  227 caagaatttctcatttatatataacgataatttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccac 326  Q
    ||||| ||||||||||||   | | |||||||||||||||    |||||| |||| ||||| |||||||| ||| |||| ||| ||||| |||| || |     
T  5539775 caagattttctcatttattcctcaggataatttggtttgcttccgtttgggtgatatggaaagaaaagaataactgtgtctttcaaaatacggtttctaa 5539874  T
Q  327 tccttttattctcattaaaaaagttaagtttaatct-tttttatggttgaaatctaaacaggcggcctttggttatacttaccatgactggtggaaacat 425  Q
    ||||| |||||||||| |||||||||||   ||| | || || ||||||||||| ||||||| | ||||| | |||| ||| ||||||||||||||||||    
T  5539875 tccttctattctcattgaaaaagttaagccaaatttattcttgtggttgaaatcaaaacaggtgtcctttagctataattatcatgactggtggaaacat 5539974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 420
Target Start/End: Complemental strand, 36400679 - 36400391
Alignment:
Q  133 tggtctaatatgagaaattggttaggtatctcattggtgccttctgatgagtttcgacgcccttttatttagttcatcaaaatgacgggtttgtcaagaa 232  Q
    ||||||||| || | ||||||||||| || || || ||||| |||| |||| || |||  | ||||||| |||| ||||| ||| | ||  || ||||||    
T  36400679 tggtctaatgtgcggaattggttaggcatttctttagtgccatctggtgagctttgacatcattttattcagtttatcaagatggcaggcatgccaagaa 36400580  T
Q  233 tttctcatttatatataacgataatttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccactccttt 332  Q
     | | ||||||| | ||||  ||||||||||||||| ||||||| |||| |||||||| | ||| || ||||||||  ||||| || | |||| |||||     
T  36400579 ctacacatttatttttaactgtaatttggtttgcaactgtttgggtgatatggaaggagaggaataatcgtgtattccaaaatacgatatccaatccttc 36400480  T
Q  333 tattctcattaaaaaagttaagtttaa-tcttttttatggttgaaatctaaacaggcggcctttggttatacttaccatgactggtgga 420  Q
     || |||| | | ||||| ||| | || || || |||||| ||||||||||||||| |||||| | |||||||||||| ||||| ||||    
T  36400479 aatactcactgagaaagtcaagctaaattccttcttatggctgaaatctaaacaggtggccttagcttatacttaccacgactgatgga 36400391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 15916144 - 15916197
Alignment:
Q  39 ttttttggataaccttcgttttactttttgctaaactttcgaatattgatatgc 92  Q
    |||||||||| || ||||||||||||||||| ||||||||||||||||||||||    
T  15916144 ttttttggatgactttcgttttactttttgccaaactttcgaatattgatatgc 15916197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 33007746 - 33007695
Alignment:
Q  254 taatttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgt 305  Q
    ||||||||||||||  ||||||| |||||||||||||||  |||||||||||    
T  33007746 taatttggtttgcatctgtttgggtgatttggaaggaaagaaacaaccgtgt 33007695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 130 - 459
Target Start/End: Original strand, 18991844 - 18992171
Alignment:
Q  130 ctctggtctaatatgagaaattggttaggtatctcattggtgccttctgatgagtttcgacgcccttttatttagttcatcaaaatgacgggtttgtcaa 229  Q
    |||||||||||| || | || || |||||||| |||| ||| ||||||| |||  ||||||  | ||||||| |||| | ||| ||| ||||| || |||    
T  18991844 ctctggtctaatgtgtggaaatgattaggtatttcatcggtaccttctggtgatcttcgacaacattttattcagtttaccaatatggcgggtatgccaa 18991943  T
Q  230 gaatttctcatttatatataacgataatttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccactcc 329  Q
    || |||||||||||||| |||  |||||||||||||||| ||||||  ||||| | |||||||||||||   |||||||| ||||| ||||||||||||     
T  18991944 gattttctcatttatatctaaaaataatttggtttgcaactgtttgagtgattggaaaggaaaagaacagttgtgtatttcaaaatacggtgtccactca 18992043  T
Q  330 ttttattctcattaaaaaagttaagtttaa-tcttttttatggttgaaatctaaacaggcggcctttggttatacttaccatgactggtggaaacatttg 428  Q
    |||| |||||||  ||||||| ||||| || || || |||||||||||||||||| ||| ||||||||   ||| |||||| ||||||||||| |||       
T  18992044 ttttcttctcatcgaaaaagtaaagttaaattcattcttatggttgaaatctaaataggtggcctttg---atagttaccacgactggtggaagcatcca 18992140  T
Q  429 ttgctttggatgtgtgttcacttgtaattta 459  Q
    || || || ||| ||||||||||||||||||    
T  18992141 ttactatgtatgagtgttcacttgtaattta 18992171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 272 - 424
Target Start/End: Complemental strand, 48489305 - 48489152
Alignment:
Q  272 tttggttgatttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccactccttttattctcattaaaaaagttaagtttaa-tcttttttatg 370  Q
    ||||| || ||||||||||||  |||||||| |||||| ||||| |||  |||||| ||||| |||||||| ||||||| ||| |||| |||||  | ||    
T  48489305 tttgggtgctttggaaggaaagaaacaaccgggtatttcaaaatacgggttccacttcttttgttctcattgaaaaagtaaagcttaattctttcctttg 48489206  T
Q  371 gttgaaatctaaacaggcggcctttggttatacttaccatgactggtggaaaca 424  Q
    | |||||||||||||| | || |||| |||  ||||||| ||||||||||||||    
T  48489205 gctgaaatctaaacagactgcttttgattacgcttaccacgactggtggaaaca 48489152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 387
Target Start/End: Complemental strand, 5786463 - 5786302
Alignment:
Q  227 caagaatttctcatttatatataacgataatttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccac 326  Q
    ||||| |||||||||||||  | | |||||| |||||||||| | ||||| ||||||||||  ||| |||||||||| ||||  ||||| ||||  ||      
T  5786463 caagagtttctcatttatacttcaggataatatggtttgcaactatttgggtgatttggaaaaaaaggaacaaccgtatattcaaaaattcggtaaccgt 5786364  T
Q  327 tccttttattctcattaaaaaagttaag-tttaatcttttttatggttgaaatctaaacagg 387  Q
    ||||||| |||||||| | ||| ||||| || | || ||  | |||||||||||||||||||    
T  5786363 tccttttgttctcattgataaaattaagcttcattcattcctttggttgaaatctaaacagg 5786302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 252 - 396
Target Start/End: Original strand, 16160225 - 16160370
Alignment:
Q  252 gataatttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccactccttttattctcattaaaaaagtt 351  Q
    ||||||||||||||||| ||||||| |||||||||| |||| |||||||||||||||| ||||| | |||||||||||||||||||||||| | ||| ||    
T  16160225 gataatttggtttgcaactgtttgggtgatttggaaagaaatgaacaaccgtgtatttcaaaatacagtgtccactccttttattctcattgataaaatt 16160324  T
Q  352 aagtttaat-cttttttatggttgaaatctaaacaggcggcctttg 396  Q
    ||| || || | || |||||| ||||||| ||||||| ||||||||    
T  16160325 aagcttcatccattcttatggctgaaatccaaacaggtggcctttg 16160370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 256 - 421
Target Start/End: Complemental strand, 3159731 - 3159565
Alignment:
Q  256 atttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccactccttttattctcattaaaaaagttaag- 354  Q
    ||||||||||| | | ||||| || |||||||||||| ||| ||||| |||||| ||||| | |  |||||| ||||| |||||||| ||||||| |||     
T  3159731 atttggtttgccactatttgggtgctttggaaggaaaggaataaccgggtatttcaaaatactggttccacttcttttgttctcattgaaaaagtaaagc 3159632  T
Q  355 tttaatcttttttatggttgaaatctaaacaggcggcctttggttatacttaccatgactggtggaa 421  Q
    || ||||||| || ||| |||||||||||||||| || |||| |||  ||||||| |||||||||||    
T  3159631 ttcaatctttcttttggctgaaatctaaacaggctgcttttgattacgcttaccacgactggtggaa 3159565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 15206039 - 15206092
Alignment:
Q  252 gataatttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgt 305  Q
    ||||||||||||||||  ||||||| ||||||||||||||| ||||||||||||    
T  15206039 gataatttggtttgcatctgtttgggtgatttggaaggaaaggaacaaccgtgt 15206092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 15245105 - 15245158
Alignment:
Q  252 gataatttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgt 305  Q
    ||||||||||||||||  ||||||| ||| ||||||||||| ||||||||||||    
T  15245105 gataatttggtttgcatctgtttgggtgacttggaaggaaaggaacaaccgtgt 15245158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 424
Target Start/End: Complemental strand, 43858230 - 43858166
Alignment:
Q  360 tcttttttatggttgaaatctaaacaggcggcctttggttatacttaccatgactggtggaaaca 424  Q
    ||||||||||||||||  |||||||||| ||| |||| |||| |||| ||||| |||||||||||    
T  43858230 tcttttttatggttgaggtctaaacaggtggcttttgcttattcttatcatgattggtggaaaca 43858166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 53505566 - 53505622
Alignment:
Q  234 ttctcatttatatataacgataatttggtttgcaattgtttggttgatttggaagga 290  Q
    ||||||||||||| | ||||| |||||||||||  |||||||| | |||||||||||    
T  53505566 ttctcatttatatctcacgatcatttggtttgctgttgtttgggttatttggaagga 53505622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 256 - 424
Target Start/End: Complemental strand, 38246104 - 38245935
Alignment:
Q  256 atttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccactccttttattctcattaaaaaagttaagt 355  Q
    |||||||||||||||  |||| ||||||||||||| |||||||||    ||||| ||||  ||||  |||||||||||| ||||||| ||||||| ||||    
T  38246104 atttggtttgcaattaattgggtgatttggaaggagaagaacaactagatatttcaaaacacggtacccactccttttactctcattgaaaaagtaaagt 38246005  T
Q  356 ttaa-tcttttttatggttgaaatctaaacaggcggcctttggttatacttaccatgactggtggaaaca 424  Q
    | || || || |||||||||||||| ||||  | ||| |||| ||||| ||| |||||| ||||||||||    
T  38246004 tcaattcattattatggttgaaatcaaaactagtggcttttgcttatagttatcatgaccggtggaaaca 38245935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 420
Target Start/End: Complemental strand, 24788623 - 24788458
Alignment:
Q  256 atttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccactccttttattctcattaaaaaagttaagt 355  Q
    ||||||||||||| ||||||| ||||||||||||| | ||| ||| |  | ||| | ||  |||| || ||||| |||| ||||||| ||||||| ||||    
T  24788623 atttggtttgcaactgtttgggtgatttggaaggagaggaataactgaatttttcataacacggtttctactccctttactctcattgaaaaagtaaagt 24788524  T
Q  356 ttaat-cttttttatggttgaaatctaaacaggcggcctttggttatacttaccatgactggtgga 420  Q
    | ||| | || |||||||||||||| |||||||   | |||| ||||| |||||| ||||||||||    
T  24788523 tgaattcattcttatggttgaaatcgaaacaggtaacttttgtttatagttaccacgactggtgga 24788458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 418
Target Start/End: Complemental strand, 12868010 - 12867874
Alignment:
Q  283 tggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccactccttttattctcattaaaaaagttaagtttaa-tcttttttatggttgaaatcta 381  Q
    |||||| ||| |||||||||||||||  |||||| ||| || | ||||| |||||||||| | || ||||| || || ||||| |||||||||||| | |    
T  12868010 tggaagaaaatgaacaaccgtgtattccaaaatgtggtttctaatccttctattctcattgacaaggttaaattaaattctttcttatggttgaaagcaa 12867911  T
Q  382 aacaggcggcctttggttatacttaccatgactggtg 418  Q
    |||||| | | ||| |||||| ||| |||||||||||    
T  12867910 aacaggtgacatttagttatagttatcatgactggtg 12867874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 38921239 - 38921179
Alignment:
Q  254 taatttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgtattttaaaa 314  Q
    ||||||||||||||| ||||||| | ||||||||||| | ||| || ||||||||| ||||    
T  38921239 taatttggtttgcaactgtttgggtcatttggaaggagaggaataatcgtgtatttaaaaa 38921179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 254 - 455
Target Start/End: Original strand, 4074 - 4276
Alignment:
Q  254 taatttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccactccttttattctcattaaaaaagttaa 353  Q
    ||||||||||||||| | ||||  |||||||||| |||| |||||||| |   ||| ||||| |||| ||| |||||||| |||||||| | ||| ||||    
T  4074 taatttggtttgcaactatttgagtgatttggaaagaaaggaacaaccatccttttcaaaatacggtatccgctccttttgttctcattgataaaattaa 4173  T
Q  354 gttt-aatcttttttatggttgaaatctaaacaggcggcctttggttatacttaccatgactggtggaaacatttgttgctttggatgtgtgttcacttg 452  Q
    |||| | || || |||||||||||||||||||| ||||| || |  |||| ||||  ||| ||||||||||||   ||||| || ||| ||||||| |||    
T  4174 gtttcattcattcttatggttgaaatctaaacaagcggctttcgtatatagttacactgattggtggaaacatccattgctctgcatgggtgttcatttg 4273  T
Q  453 taa 455  Q
    |||    
T  4274 taa 4276  T

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Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 227 - 387
Target Start/End: Original strand, 13760851 - 13761011
Alignment:
Q  227 caagaatttctcatttatatataacgataatttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccac 326  Q
    ||||| ||||||||||||   ||| ||||||||||||||| | ||||||| |||| || ||||||| ||| |||||||| ||| ||||| | || || |     
T  13760851 caagattttctcatttattcctaaggataatttggtttgctactgtttgggtgatatgaaaggaaaggaataaccgtgtctttcaaaatacagtttcta- 13760949  T
Q  327 tccttttattctcattaaaaaagttaagtttaa-tcttttttatggttgaaatctaaacagg 387  Q
    || ||||||||||||| ||||||||||| | || || || |||||||||||||| |||||||    
T  13760950 tctttttattctcattgaaaaagttaagctaaattcattcttatggttgaaatcaaaacagg 13761011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 424
Target Start/End: Complemental strand, 13808069 - 13807900
Alignment:
Q  256 atttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccactccttttattctcattaaaaaagttaagt 355  Q
    ||||||||||||| ||||||| ||||||||||||||  ||||||| | |||||  ||||| |  | ||| |||||| |  ||||||| || |||| ||||    
T  13808069 atttggtttgcaactgtttggatgatttggaaggaattgaacaactgggtattccaaaatacactttccgctccttcttctctcattgaacaagtaaagt 13807970  T
Q  356 ttaa-tcttttttatggttgaaatctaaacaggcggcctttggttatacttaccatgactggtggaaaca 424  Q
    | || || ||||||||||||||||| ||||| | ||| || | ||||| ||| ||||| |||||||||||    
T  13807969 taaattcctttttatggttgaaatcaaaacatgtggcgttcgcttatagttatcatgattggtggaaaca 13807900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 387
Target Start/End: Complemental strand, 35769069 - 35768908
Alignment:
Q  227 caagaatttctcatttatatataacgataatttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccac 326  Q
    ||||| |||||||||||||  | | ||||||||||||||||| | ||||| |||||||||| |||| |||||||||| ||||  ||||| ||||  || |    
T  35769069 caagagtttctcatttatacttcaggataatttggtttgcaactatttggatgatttggaaagaaaggaacaaccgtatattccaaaatacggtaaccgc 35768970  T
Q  327 tccttttattctcattaaaaaagttaagtttaa-tcttttttatggttgaaatctaaacagg 387  Q
    ||||||| |||| ||| | ||| ||||  |||| || ||  | |||||||||||||||||||    
T  35768969 tccttttgttctgattgataaaattaaacttaattcgttcctttggttgaaatctaaacagg 35768908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 460
Target Start/End: Complemental strand, 19480746 - 19480646
Alignment:
Q  360 tcttttttatggttgaaatctaaacaggcggcctttggttatacttaccatgactggtggaaacatttgttgctttggatgtgtgttcacttgtaattta 459  Q
    ||||| |||||||||||||| ||||||| |   ||| |||| | ||||||||||||||||||||||    | ||||| ||| ||||||||||||||||||    
T  19480746 tctttcttatggttgaaatcaaaacaggggctatttagttacagttaccatgactggtggaaacatccccttctttgtatgggtgttcacttgtaattta 19480647  T
Q  460 g 460  Q
    |    
T  19480646 g 19480646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 424
Target Start/End: Original strand, 1718411 - 1718475
Alignment:
Q  360 tcttttttatggttgaaatctaaacaggcggcctttggttatacttaccatgactggtggaaaca 424  Q
    ||||||||||||||||  |||||||||| ||| |||| |||| |||| ||||| |||||||||||    
T  1718411 tcttttttatggttgaggtctaaacaggtggcttttgattattcttatcatgattggtggaaaca 1718475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 301
Target Start/End: Original strand, 9598590 - 9598637
Alignment:
Q  254 taatttggtttgcaattgtttggttgatttggaaggaaaagaacaacc 301  Q
    ||||||||||||||  ||||||| ||||||||||||||| ||||||||    
T  9598590 taatttggtttgcatctgtttgggtgatttggaaggaaaggaacaacc 9598637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 301
Target Start/End: Original strand, 9826161 - 9826208
Alignment:
Q  254 taatttggtttgcaattgtttggttgatttggaaggaaaagaacaacc 301  Q
    ||||||||||||||  ||||||| ||||||||||||||| ||||||||    
T  9826161 taatttggtttgcatctgtttgggtgatttggaaggaaaggaacaacc 9826208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 285 - 424
Target Start/End: Original strand, 14207304 - 14207444
Alignment:
Q  285 gaaggaaaagaacaaccgtgtattttaaaatgcggtgtccactccttttattctcattaaaaaagttaagtttaat-cttttttatggttgaaatctaaa 383  Q
    |||||||| ||||||||  || ||| ||||| |||  || ||| ||||| |||||||| ||||||| |||||| || | || || |||||||||||||||    
T  14207304 gaaggaaaggaacaaccaggtttttcaaaatacgggttctacttcttttgttctcattgaaaaagtaaagtttcattccttcttttggttgaaatctaaa 14207403  T
Q  384 caggcggcctttggttatacttaccatgactggtggaaaca 424  Q
    |||||||| |||| ||| ||||| || ||| ||||||||||    
T  14207404 caggcggcttttgcttacacttatcacgaccggtggaaaca 14207444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 431
Target Start/End: Original strand, 41514227 - 41514296
Alignment:
Q  362 ttttttatggttgaaatctaaacaggcggcctttggttatacttaccatgactggtggaaacatttgttg 431  Q
    ||||||||||||||||||||||||||| || || | |||||||||  ||||| ||||||||||| |||||    
T  41514227 ttttttatggttgaaatctaaacaggcagcattagcttatacttattatgacgggtggaaacatctgttg 41514296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 424
Target Start/End: Complemental strand, 46269158 - 46269094
Alignment:
Q  360 tcttttttatggttgaaatctaaacaggcggcctttggttatacttaccatgactggtggaaaca 424  Q
    |||||||||||||||| ||||||||||| ||| |||| |||| |||| ||||| |||||||||||    
T  46269158 tcttttttatggttgagatctaaacaggtggcttttgcttattcttatcatgattggtggaaaca 46269094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 22157870 - 22157819
Alignment:
Q  254 taatttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgt 305  Q
    ||||||||||||||  ||||||| ||||||||||||||| ||||||||||||    
T  22157870 taatttggtttgcatctgtttgggtgatttggaaggaaaggaacaaccgtgt 22157819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 31403960 - 31404016
Alignment:
Q  252 gataatttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgtatt 308  Q
    |||||||||||||||||  |||||| ||||||||||||| | ||| ||||| |||||    
T  31403960 gataatttggtttgcaaccgtttggatgatttggaaggataggaataaccgcgtatt 31404016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 424
Target Start/End: Complemental strand, 19229512 - 19229381
Alignment:
Q  294 gaacaaccgtgtattttaaaatgcggtgtccactccttttattctcattaaaaaagttaagtttaa-tcttttttatggttgaaatctaaacaggcggcc 392  Q
    |||||||||  ||||| ||||| |||| ||||||||||| | |||| |||||||||| ||||| || || || |||||||||||||| ||||| | |||     
T  19229512 gaacaaccggatatttcaaaatacggtatccactcctttcactctcgttaaaaaagtaaagttcaattcattcttatggttgaaatcaaaacaagtggct 19229413  T
Q  393 tttggttatacttaccatgactggtggaaaca 424  Q
    |||| ||||| |||||| ||| |||| |||||    
T  19229412 tttgcttatagttaccacgaccggtgaaaaca 19229381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 425
Target Start/End: Complemental strand, 8234007 - 8233945
Alignment:
Q  363 tttttatggttgaaatctaaacaggcggcctttggttatacttaccatgactggtggaaacat 425  Q
    ||||||||||||||||||||||||||| | || | |||| ||||  |||||||||||||||||    
T  8234007 tttttatggttgaaatctaaacaggcgtcattagcttattcttattatgactggtggaaacat 8233945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 256 - 420
Target Start/End: Complemental strand, 3297053 - 3296888
Alignment:
Q  256 atttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccactccttttattctcattaaaaaagttaagt 355  Q
    ||||||||||||| ||||||| |||| ||||||||   ||| || ||||| ||  ||||| || | |||| |||||  || |||||| | ||||| |||     
T  3297053 atttggtttgcaactgtttgggtgatatggaaggagcggaataatcgtgtcttccaaaatacgatatccaatccttcaatactcattgagaaagtcaagc 3296954  T
Q  356 ttaat-cttttttatggttgaaatctaaacaggcggcctttggttatacttaccatgactggtgga 420  Q
    | ||| | || |||||| ||||||||||||| | |||||| | ||||||||||||||| |||||||    
T  3296953 taaattcattcttatggctgaaatctaaacatgtggccttagcttatacttaccatgattggtgga 3296888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 24395694 - 24395738
Alignment:
Q  248 taacgataatttggtttgcaattgtttggttgatttggaaggaaa 292  Q
    |||| |||||||||||||||| ||||||| |||||||||||||||    
T  24395694 taactataatttggtttgcaactgtttgggtgatttggaaggaaa 24395738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 21605364 - 21605318
Alignment:
Q  253 ataatttggtttgcaattgtttggttgatttggaaggaaaagaacaa 299  Q
    |||||||||||||||  ||||||| ||||||||||||||| ||||||    
T  21605364 ataatttggtttgcatctgtttgggtgatttggaaggaaaggaacaa 21605318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 424
Target Start/End: Original strand, 11466915 - 11466979
Alignment:
Q  360 tcttttttatggttgaaatctaaacaggcggcctttggttatacttaccatgactggtggaaaca 424  Q
    |||||||| |||||||||||||| |||||| || | | || |  |||||||||||||||||||||    
T  11466915 tcttttttgtggttgaaatctaaccaggcgtccatcgatttttgttaccatgactggtggaaaca 11466979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 18970951 - 18970907
Alignment:
Q  248 taacgataatttggtttgcaattgtttggttgatttggaaggaaa 292  Q
    |||| |||||||||||||||| ||||| | |||||||||||||||    
T  18970951 taactataatttggtttgcaactgtttaggtgatttggaaggaaa 18970907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 25778 - 25822
Alignment:
Q  248 taacgataatttggtttgcaattgtttggttgatttggaaggaaa 292  Q
    |||| |||||||||||||||| ||||||| |||||||||||||||    
T  25778 taactataatttggtttgcaactgtttggatgatttggaaggaaa 25822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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