View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13954_high_2 (Length: 396)
Name: NF13954_high_2
Description: NF13954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13954_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 5088273 - 5088638
Alignment:
| Q |
18 |
acccttatgatgttccatggtgtttctatatgattgtatactcagttctatgtgtctaatttaagctttttgtccagtagctaaattgtgctgtgatttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5088273 |
acccttatgatgttccatggtgtttctatatgattgtatactcagttctatgtgtctaatttaagctttttgtccagtagctaaattgtgctgtgatttg |
5088372 |
T |
|
| Q |
118 |
tttagttggctgcacctttggagacattaggaaaagctgcagctgaactacaaataaagaaacggactcatataggtaggtatatgcaaatccacaaaag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5088373 |
tttagttggctgcacctttggagacattaggaagagctgcagctgaactacaaataaagaaacggactcatataggtaggtatatgcaaatccacaaaag |
5088472 |
T |
|
| Q |
218 |
gagcatgtgttctaccgaatacagttttatgtttaagttcacgttgtaaaatgtagctagctagcatgtgatgtgatcgtttgtgttactgtgtcttgtg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5088473 |
gagcatgtgttctaccgaatacagttttatgtttaagttcacgttgtaaaatgtagctagctagcatgtgatgtgatcatttgtgttactgtgtcttgtg |
5088572 |
T |
|
| Q |
318 |
ctatgccaggtatggatttacaatttgaggtggaagaggttgaagctttcgtgaaacaacctgatg |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5088573 |
ctatgccaggtatggatttacaatttgaggtggaagaggttgaagctttcgtgaaacaacctgatg |
5088638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University