View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13954_high_4 (Length: 330)

Name: NF13954_high_4
Description: NF13954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13954_high_4
NF13954_high_4
[»] chr8 (9 HSPs)
chr8 (7-312)||(1962281-1962581)
chr8 (7-151)||(2019231-2019375)
chr8 (7-297)||(2015848-2016143)
chr8 (7-147)||(2013381-2013522)
chr8 (7-128)||(2008834-2008955)
chr8 (7-128)||(1968060-1968181)
chr8 (7-129)||(2005454-2005576)
chr8 (22-123)||(2012464-2012565)
chr8 (47-126)||(1964500-1964581)
[»] chr1 (1 HSPs)
chr1 (6-129)||(5901638-5901761)
[»] chr3 (1 HSPs)
chr3 (12-128)||(18189425-18189541)


Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 312
Target Start/End: Complemental strand, 1962581 - 1962281
Alignment:
Q  7 gtgagatgaaagtatggatgaagctgaacaagtagtttggagaattgaagaattgggaataagtggctatatccaacaccaggaacaactgcaatatgaa 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1962581 gtgacatgaaagtatggatgaagctgaacaagtagtttggagaattgaagaattgggaataagtggctatatccaacaccaggaacaactgcaatatgaa 1962482  T
Q  107 ctgttttctccatgaaaatttgttcttagtttacagcttataagttaatannnnnnnatgcttgtgaaaggaaaaccaaaaacagaactcaactcaacta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||     ||||||||||    
T  1962481 ctgttttctccatgaaaatttgttcttagtttacagcttataagttaatatttttttatgcttgtgaaaggaaaaccaaaaacag-----aactcaacta 1962387  T
Q  207 cctatacatgttctgcaaaatcaacattatgtatatgtttgagaagtttcaaaacgaatgaataagagccacacatgttgggaagaacaaaacaggcacc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1962386 cctatacatgttctgcaaaatcaacattatgtatatgtttgagaagtttcaaaacgaatgaataagagccacacatgttgggaagaacaaaacaggcacc 1962287  T
Q  307 aagtgt 312  Q
    ||||||    
T  1962286 aagtgt 1962281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 151
Target Start/End: Original strand, 2019231 - 2019375
Alignment:
Q  7 gtgagatgaaagtatggatgaagctgaacaagtagtttggagaattgaagaattgggaataagtggctatatccaacaccaggaacaactgcaatatgaa 106  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||    
T  2019231 gtgacatgaaagtatggatgaagctgaacaagtagcttggagaattgaagaatcgggaataagtggccatatccaacacctggaacaactgcaatatgaa 2019330  T
Q  107 ctgttttctccatgaaaatttgttcttagtttacagcttataagt 151  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  2019331 ctgttttctccatgaaaattagttattagtttacagcttataagt 2019375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 7 - 297
Target Start/End: Original strand, 2015848 - 2016143
Alignment:
Q  7 gtgagatgaaagtatggatgaagctgaacaagtagtttggagaattgaagaattgggaataagtggctatatccaacaccaggaacaactgcaatatgaa 106  Q
    |||| |||||||| |||||||||||||||||||   ||||||||||||||||| | ||  || ||||||||||||||||| |||||||||||||||||||    
T  2015848 gtgacatgaaagtttggatgaagctgaacaagtctcttggagaattgaagaatagagaccaaatggctatatccaacacctggaacaactgcaatatgaa 2015947  T
Q  107 ctgttttctccatgaaaatttgttcttagtttacagcttataa-----------gttaatannnnnnnatgcttgtgaaaggaaaaccaaaaacagaact 195  Q
     |||||||||||| |||||||||||||||||||| ||||||||            ||  |        ||||||||||||||||||||||||||||        
T  2015948 ttgttttctccataaaaatttgttcttagtttaccgcttataacttttttttttttttttttttttttatgcttgtgaaaggaaaaccaaaaacag---- 2016043  T
Q  196 caactcaactacctatacatgttctgcaaaatcaacattatgtatatgtttgagaagtttcaaaacgaatgaataagagccacacatgttgggaagaaca 295  Q
     |||||| |||||| |||||| ||||||||||  ||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| |||||||||||    
T  2016044 -aactcacctacctctacatgctctgcaaaattgacattatgtatgtgtttgacaagtttcaaaacg-atgaataagagccacacatgatgggaagaaca 2016141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 2013381 - 2013522
Alignment:
Q  7 gtgagatgaaagtatggatgaagctgaacaagtagtttggagaattgaagaattgggaataagtggctatatccaacaccaggaacaactgcaatatgaa 106  Q
    |||| |||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  2013381 gtgacatgaaagtatggatgaagctgaacaagtagcttcgaaaattgaagaattgggaataagtgactatatccaacacctggaacaactgcaatatgaa 2013480  T
Q  107 ctgttttctccatgaaaatttgtt-cttagtttacagcttat 147  Q
     | ||||||||||| |||||||||  ||||||||||||||||    
T  2013481 tttttttctccatggaaatttgttgtttagtttacagcttat 2013522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 2008834 - 2008955
Alignment:
Q  7 gtgagatgaaagtatggatgaagctgaacaagtagtttggagaattgaagaattgggaataagtggctatatccaacaccaggaacaactgcaatatgaa 106  Q
    |||| |||||||| |||||||||||||||||||   ||||||||||||||||| ||||  || ||||||||||||||||| |||||||||||||||||||    
T  2008834 gtgacatgaaagtttggatgaagctgaacaagtctcttggagaattgaagaatagggaccaaatggctatatccaacacctggaacaactgcaatatgaa 2008933  T
Q  107 ctgttttctccatgaaaatttg 128  Q
    |||||||||||||| |||||||    
T  2008934 ctgttttctccatggaaatttg 2008955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 128
Target Start/End: Complemental strand, 1968181 - 1968060
Alignment:
Q  7 gtgagatgaaagtatggatgaagctgaacaagtagtttggagaattgaagaattgggaataagtggctatatccaacaccaggaacaactgcaatatgaa 106  Q
    |||| |||||||| ||||||||| |||||||||   ||||||||||||||||| ||||  || || |||||||||||||| |||||||||||||||||||    
T  1968181 gtgacatgaaagtctggatgaagttgaacaagtctcttggagaattgaagaatagggaccaaatgactatatccaacacctggaacaactgcaatatgaa 1968082  T
Q  107 ctgttttctccatgaaaatttg 128  Q
    |||||||||||||| |||||||    
T  1968081 ctgttttctccatggaaatttg 1968060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 2005454 - 2005576
Alignment:
Q  7 gtgagatgaaagtatggatgaagctgaacaagtagtttggagaattgaagaattgggaataagtggctatatccaacaccaggaacaactgcaatatgaa 106  Q
    |||| |||||||| ||||||||| |||||||||   ||||||||||||||||| | ||  || ||||||||||||||||| |||||||||||||||||||    
T  2005454 gtgacatgaaagtttggatgaagttgaacaagtctcttggagaattgaagaatagagaccaaatggctatatccaacacctggaacaactgcaatatgaa 2005553  T
Q  107 ctgttttctccatgaaaatttgt 129  Q
     ||||||||||||| ||| ||||    
T  2005554 ttgttttctccatggaaacttgt 2005576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 2012464 - 2012565
Alignment:
Q  22 ggatgaagctgaacaagtagtttggagaattgaagaattgggaataagtggctatatccaacaccaggaacaactgcaatatgaactgttttctccatga 121  Q
    ||||||||||| | |||||  || ||||| |||||||| |||| |||||| | ||| || ||||| |||||||| ||||| |||| |||||| |||||||    
T  2012464 ggatgaagctggataagtaactttgagaaatgaagaatagggactaagtgtccatacccgacacctggaacaacggcaatgtgaattgttttatccatga 2012563  T
Q  122 aa 123  Q
    ||    
T  2012564 aa 2012565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 1964581 - 1964500
Alignment:
Q  47 agaattgaagaattgggaataagtggctatat--ccaacaccaggaacaactgcaatatgaactgttttctccatgaaaatt 126  Q
    ||||||||||||| | || ||| ||| |||||  |||||||| |||||||||||||| ||||  |||||||||||| |||||    
T  1964581 agaattgaagaatagagactaaatggatatatacccaacacctggaacaactgcaatgtgaatggttttctccatggaaatt 1964500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 5901761 - 5901638
Alignment:
Q  6 agtgagatgaaagtatggatgaagctgaacaagtagtttggagaattgaagaattgggaataagtggctatatccaacaccaggaacaactgcaatatga 105  Q
    ||||| |||||||| |||||| |||||||||||||| |||||||||| |||||| | || ||| |||||||| | | |||| |||| ||| ||||| |||    
T  5901761 agtgacatgaaagtctggatggagctgaacaagtagcttggagaattcaagaatagagactaaatggctataccaagcacctggaataacagcaatgtga 5901662  T
Q  106 actgttttctccatgaaaatttgt 129  Q
    | ||||||||||||||||||||||    
T  5901661 attgttttctccatgaaaatttgt 5901638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 18189541 - 18189425
Alignment:
Q  12 atgaaagtatggatgaagctgaacaagtagtttggagaattgaagaattgggaataagtggctatatccaacaccaggaacaactgcaatatgaactgtt 111  Q
    ||||| || ||||||||| || | |||||  || |||||||||||||| |||| |||||| | ||| |||||||| |||||||||||||| |||| ||||    
T  18189541 atgaatgtctggatgaagatggataagtaactttgagaattgaagaatagggactaagtgtccatacccaacacctggaacaactgcaatgtgaattgtt 18189442  T
Q  112 ttctccatgaaaatttg 128  Q
    || |||||| |||||||    
T  18189441 ttatccatggaaatttg 18189425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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