View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13954_high_5 (Length: 326)
Name: NF13954_high_5
Description: NF13954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13954_high_5 |
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| [»] chr8 (9 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 11 - 326
Target Start/End: Complemental strand, 1962868 - 1962553
Alignment:
| Q |
11 |
cataggacaacaagttgaattccttagcaaaatctagtgcatcaattgctaatgcatcaaccaccaaggcaacaaagggtgtccttaaagttaaggactt |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1962868 |
cataggacaacaagttgaattccttagcaaaatctagtgcatcaattgctaatgcatcaaccaccaaggcaacaaagggtgcccttaaagttaaggactt |
1962769 |
T |
|
| Q |
111 |
caaggcctgatgtatagatggcagtgagtgagttagtgtgagctgaagttgaagggctaaagcaaccccttgtggtaggtcattagagttcactggtgga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962768 |
caaggcctgatgtatagatggcagtgagtgagttagtgtgagctgaagttgaagggctaaagcaaccccttgtggtaggtcattagagttcactggtgga |
1962669 |
T |
|
| Q |
211 |
agaaaagtacagctgatgtttgatggaagagtttcaagtattgtttttgaatcagttgggagagaaccaagtgagggaatgaagcatgtgacatgaaagt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962668 |
agaaaagtacagctgatgtttgatggaagagtttcaagtattgtttttgaatcagttgggagagaaccaagtgagggaatgaagcatgtgacatgaaagt |
1962569 |
T |
|
| Q |
311 |
atggatgaagctgaac |
326 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
1962568 |
atggatgaagctgaac |
1962553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 326
Target Start/End: Original strand, 2015561 - 2015876
Alignment:
| Q |
11 |
cataggacaacaagttgaattccttagcaaaatctagtgcatcaattgctaatgcatcaaccaccaaggcaacaaagggtgtccttaaagttaaggactt |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||| |||||| || |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2015561 |
cataggacaacaagttgaattccttagcaaaatccagtgcatccattgctgatatatcaaccaccaaggcaacaaagggtgtctttaaagttaaggactt |
2015660 |
T |
|
| Q |
111 |
caaggcctgatgtatagatggcagtgagtgagttagtgtgagctgaagttgaagggctaaagcaaccccttgtggtaggtcattagagttcactggtgga |
210 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
2015661 |
caaggcctgatgtatagatggcagtgagtgagtcagtgtgagctgaagttgaagtactaaagcaatcccttgtggtaggtcattggagttcactggtgga |
2015760 |
T |
|
| Q |
211 |
agaaaagtacagctgatgtttgatggaagagtttcaagtattgtttttgaatcagttgggagagaaccaagtgagggaatgaagcatgtgacatgaaagt |
310 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2015761 |
agaaaagtacagctgatgtttgatggaagagtttgaaggattgtttttgaatcagttgggagagaaccaagtgagggaatgaagcatgtgacatgaaagt |
2015860 |
T |
|
| Q |
311 |
atggatgaagctgaac |
326 |
Q |
| |
|
||||||||||||||| |
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|
| T |
2015861 |
ttggatgaagctgaac |
2015876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 326
Target Start/End: Original strand, 2018944 - 2019259
Alignment:
| Q |
11 |
cataggacaacaagttgaattccttagcaaaatctagtgcatcaattgctaatgcatcaaccaccaaggcaacaaagggtgtccttaaagttaaggactt |
110 |
Q |
| |
|
|||||||||||| |||||| || |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2018944 |
cataggacaacatgttgaactctttagcaaaatctagtgcatcgattgctaatgaatcaaccaccaaggcaacaaagggtgtccttaaagttaaggactt |
2019043 |
T |
|
| Q |
111 |
caaggcctgatgtatagatggcagtgagtgagttagtgtgagctgaagttgaagggctaaagcaaccccttgtggtaggtcattagagttcactggtgga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||| ||||||||||| ||| || ||| |||||| |||| |
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| T |
2019044 |
caaggcctgatgtatagatggcagtgagtgaattactgtgagctgaatttgaagtactaaagcaatcccttgtggtaagtctttggagctcactgatgga |
2019143 |
T |
|
| Q |
211 |
agaaaagtacagctgatgtttgatggaagagtttcaagtattgtttttgaatcagttgggagagaaccaagtgagggaatgaagcatgtgacatgaaagt |
310 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| || || ||||||||||| ||||||||||| ||| |||||||||||| |||||||||||||||| |
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| T |
2019144 |
agaaaagtacagttgatgtttgatggaagagtttgaatgatggtttttgaatcggttgggagagactcaattgagggaatgaaacatgtgacatgaaagt |
2019243 |
T |
|
| Q |
311 |
atggatgaagctgaac |
326 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
2019244 |
atggatgaagctgaac |
2019259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 177 - 326
Target Start/End: Original strand, 2005333 - 2005482
Alignment:
| Q |
177 |
cccttgtggtaggtcattagagttcactggtggaagaaaagtacagctgatgtttgatggaagagtttcaagtattgtttttgaatcagttgggagagaa |
276 |
Q |
| |
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|||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||||||||||||| ||| || | ||||| ||||| | |||| |
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| T |
2005333 |
cccttgtggtaggtcattagggttcacaggtggaagaaaagtatggttgatgtttgatggaagagtttgaaggatagattttgtggtagttgagggagat |
2005432 |
T |
|
| Q |
277 |
ccaagtgagggaatgaagcatgtgacatgaaagtatggatgaagctgaac |
326 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||| ||||| |
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| T |
2005433 |
ccaagtgagggaatgaaacatgtgacatgaaagtttggatgaagttgaac |
2005482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 177 - 326
Target Start/End: Original strand, 2008713 - 2008862
Alignment:
| Q |
177 |
cccttgtggtaggtcattagagttcactggtggaagaaaagtacagctgatgtttgatggaagagtttcaagtattgtttttgaatcagttgggagagaa |
276 |
Q |
| |
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|||||||||||||||||| | |||||| |||||||||||||| | ||||||||||||||||||||| ||| || | ||||| || ||| | |||| |
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| T |
2008713 |
cccttgtggtaggtcattggggttcacaggtggaagaaaagtgtggttgatgtttgatggaagagtttgaaggatagattttgtggcatttgagggagat |
2008812 |
T |
|
| Q |
277 |
ccaagtgagggaatgaagcatgtgacatgaaagtatggatgaagctgaac |
326 |
Q |
| |
|
||||| | ||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
2008813 |
ccaagcgtgggaatgaaacatgtgacatgaaagtttggatgaagctgaac |
2008862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 326
Target Start/End: Complemental strand, 1968302 - 1968153
Alignment:
| Q |
177 |
cccttgtggtaggtcattagagttcactggtggaagaaaagtacagctgatgtttgatggaagagtttcaagtattgtttttgaatcagttgggagagaa |
276 |
Q |
| |
|
|||||||||||||||||| | ||||| |||||||||||||| | ||||||||||||||||||||| ||| || | ||||| || ||| | |||| |
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|
| T |
1968302 |
cccttgtggtaggtcattgggattcacaggtggaagaaaagtgtggttgatgtttgatggaagagtttgaaggatagattttgtggcatttgagggagat |
1968203 |
T |
|
| Q |
277 |
ccaagtgagggaatgaagcatgtgacatgaaagtatggatgaagctgaac |
326 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||| ||||||||| ||||| |
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|
| T |
1968202 |
ccaagtgtgggaatgaaacatgtgacatgaaagtctggatgaagttgaac |
1968153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 2012163 - 2012251
Alignment:
| Q |
12 |
ataggacaacaagttgaattccttagcaaaatctagtgcatcaattgctaatgcatcaaccaccaaggcaacaaagggtgtccttaaag |
100 |
Q |
| |
|
||||||||||| ||||||||| |||||||| | |||||| |||| || || ||||||||||||||||| |||| ||| ||||||||| |
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|
| T |
2012163 |
ataggacaacatgttgaattctttagcaaagtttagtgcttcaacagcaaaagcatcaaccaccaaggccacaaggggaatccttaaag |
2012251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 295 - 326
Target Start/End: Original strand, 2013378 - 2013409
Alignment:
| Q |
295 |
catgtgacatgaaagtatggatgaagctgaac |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
2013378 |
catgtgacatgaaagtatggatgaagctgaac |
2013409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 323
Target Start/End: Original strand, 2012380 - 2012474
Alignment:
| Q |
229 |
tttgatggaagagtttcaagtattgtttttgaatcagttgggagagaaccaagtgagggaatgaagcatgtgacatgaaagtatggatgaagctg |
323 |
Q |
| |
|
||||||||||| |||| ||| || |||| ||| | ||||| |||||||||||| |||||||| ||||||||||||| || ||||||||||| |
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| T |
2012380 |
tttgatggaagggtttgaaggatggtttctgaggaacttgggggagaaccaagtgtgggaatgatacatgtgacatgaatgtccggatgaagctg |
2012474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 326
Target Start/End: Complemental strand, 5902047 - 5901732
Alignment:
| Q |
11 |
cataggacaacaagttgaattccttagcaaaatctagtgcatcaattgctaatgcatcaaccaccaaggcaacaaagggtgtccttaaagttaaggactt |
110 |
Q |
| |
|
|||||||||||| |||||| |||||||| ||||||||||| || | ||| | ||||||||||| || ||| ||| ||||||||||||||||| || |
|
|
| T |
5902047 |
cataggacaacatgttgaactccttagccaaatctagtgcttcggcagataaagaatcaaccaccagtgccacagggggagtccttaaagttaaggagtt |
5901948 |
T |
|
| Q |
111 |
caaggcctgatgtatagatggcagtgagtgagttagtgtgagctgaagttgaagggctaaagcaaccccttgtggtaggtcattagagttcactggtgga |
210 |
Q |
| |
|
||| |||||||||| | ||||||| | | | || || ||| |||| ||| ||| | | |||||| |||||||| || | ||||| |||||| |
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|
| T |
5901947 |
caatgcctgatgtaaatatggcagagtgagtgtcgttgcgagatgaatttggcattctacactagtcccttgaggtaggtcgttgggattcacaggtgga |
5901848 |
T |
|
| Q |
211 |
agaaaagtacagctgatgtttgatggaagagtttcaagtattgtttttgaatcagttgggagagaaccaagtgagggaatgaagcatgtgacatgaaagt |
310 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||| ||| | || ||||| || ||| | | || ||||||| ||||||||||| ||||||||||||| |
|
|
| T |
5901847 |
agaaaagtgtagccaatgtttgatggaagagtttgaaggaatgactttgaggcacttgagggtgatccaagtgtaggaatgaagcaagtgacatgaaagt |
5901748 |
T |
|
| Q |
311 |
atggatgaagctgaac |
326 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
5901747 |
ctggatggagctgaac |
5901732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 318
Target Start/End: Complemental strand, 16565793 - 16565749
Alignment:
| Q |
274 |
gaaccaagtgagggaatgaagcatgtgacatgaaagtatggatga |
318 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||| | ||||||| |
|
|
| T |
16565793 |
gaaccaagtgagggaatgatgcaagtgacatgaaaatttggatga |
16565749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 16599869 - 16599913
Alignment:
| Q |
274 |
gaaccaagtgagggaatgaagcatgtgacatgaaagtatggatga |
318 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||| | ||||||| |
|
|
| T |
16599869 |
gaaccaagtgagggaatgatgcaagtgacatgaaaatttggatga |
16599913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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