View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13954_high_6 (Length: 316)
Name: NF13954_high_6
Description: NF13954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13954_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 7876948 - 7876648
Alignment:
| Q |
1 |
tgggacatctatccattgttaattctgaaagagctgcattaatcctttttcaaaacctcaatgagattgtgttagagaaaacttacaattctaaaacaga |
100 |
Q |
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| T |
7876948 |
tgggaaatctatgcattgttaattctgaaagagatacattaagcatttttcaaaacctcaatgagattgtgttagagaaaacctacaattctaaaacaga |
7876849 |
T |
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| Q |
101 |
aaggggtatgcctaaactttaaatctaaatatattaggagagtcaaatcccttaaatcaagggatttatttagaatataagggatgtaattgcttgatat |
200 |
Q |
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| T |
7876848 |
aaggtgtatgcctaaactttaaatctaaatatattaggagagtcaaatcccttaaatcaagggatttatttagaatataagggatgtatttgcttgatat |
7876749 |
T |
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| Q |
201 |
aatcaccattttactcaatactaaatttacatttgtgttaactttctctcctctcatccttttgagctacataacagaaacacccgaacacaatagtaac |
300 |
Q |
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| T |
7876748 |
aatcaccattttactcaatactaaatttacatttgtgttaactttctctcctctcatccttttgagttacataacagaaacacccgaacacaatagtaac |
7876649 |
T |
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| Q |
301 |
c |
301 |
Q |
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| T |
7876648 |
c |
7876648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 17782728 - 17782784
Alignment:
| Q |
66 |
attgtgttagagaaaacttacaattctaaaacagaaaggggtatgcctaaactttaa |
122 |
Q |
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| T |
17782728 |
attgtgttggagaaaacttacgattctaaaacaggaaggggtatgcctgaactttaa |
17782784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 17782607 - 17782664
Alignment:
| Q |
1 |
tgggacatctatccattgttaattctgaaagagctgcattaatcctttttcaaaacctca |
60 |
Q |
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| T |
17782607 |
tgggaaatctatgcattgttagttctgaaaga--tgcattaaacatttttcaaaacctca |
17782664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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