View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13954_high_9 (Length: 266)

Name: NF13954_high_9
Description: NF13954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13954_high_9
NF13954_high_9
[»] chr5 (3 HSPs)
chr5 (23-256)||(43255718-43255951)
chr5 (23-256)||(43258984-43259217)
chr5 (27-220)||(43247725-43247918)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 43255718 - 43255951
Alignment:
Q  23 aacaagagcttgaataaagtaacccaatattgccaacatagctaatcttccattcttaacttccttcagctttaattctttcaatgatttctcatcttta 122  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43255718 aacaagagcttgaataaagtaacccaatattgccaacattgctaaccttccattcttaacttccttcagctttaattctttcaatgatttctcatcttta 43255817  T
Q  123 ccaaaaccaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttcccatgg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43255818 ccaaaaccaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttcccatgg 43255917  T
Q  223 aaccaggattgtaccaatcttggagtcttctgtg 256  Q
    ||||||||||||||||||||||||||||||||||    
T  43255918 aaccaggattgtaccaatcttggagtcttctgtg 43255951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 43258984 - 43259217
Alignment:
Q  23 aacaagagcttgaataaagtaacccaatattgccaacatagctaatcttccattcttaacttccttcagctttaattctttcaatgatttctcatcttta 122  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43258984 aacaagagcttgaataaagtaacccaatattgccaacattgctaaccttccattcttaacttccttcagctttaattccttcaatgatttctcatcttta 43259083  T
Q  123 ccaaaaccaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttcccatgg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43259084 ccaaaaccaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttcccatgg 43259183  T
Q  223 aaccaggattgtaccaatcttggagtcttctgtg 256  Q
    | |||||||||||||||||||||| |||||||||    
T  43259184 agccaggattgtaccaatcttggaatcttctgtg 43259217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 27 - 220
Target Start/End: Original strand, 43247725 - 43247918
Alignment:
Q  27 agagcttgaataaagtaacccaatattgccaacatagctaatcttccattcttaacttccttcagctttaattctttcaatgatttctcatctttaccaa 126  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  43247725 agagcttgaacaaagtaacccaatattgccaacatagctaaccttccattcttaacttccttcagctttaaatccttcaatgatttctcatctttaccaa 43247824  T
Q  127 aaccaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttcccat 220  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||    
T  43247825 aaccaagagggttaaatataggtccaccagggtatgctggttcaccggaaccgccaagacctttctcaagtcctaaaaagtattgttttcccat 43247918  T

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