View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13954_low_1 (Length: 677)

Name: NF13954_low_1
Description: NF13954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13954_low_1
NF13954_low_1
[»] chr5 (15 HSPs)
chr5 (1-671)||(6731495-6732169)
chr5 (420-663)||(6716370-6716613)
chr5 (527-663)||(6773811-6773947)
chr5 (580-660)||(6738915-6738995)
chr5 (580-660)||(6748967-6749047)
chr5 (403-663)||(7096767-7097027)
chr5 (576-663)||(6724287-6724374)
chr5 (71-276)||(6740511-6740716)
chr5 (197-313)||(7095671-7095787)
chr5 (197-256)||(6749593-6749652)
chr5 (353-600)||(6761852-6762091)
chr5 (632-670)||(6761812-6761850)
chr5 (195-276)||(6725410-6725491)
chr5 (313-361)||(6724617-6724665)
chr5 (507-555)||(6749072-6749120)
[»] chr8 (2 HSPs)
chr8 (577-619)||(33912557-33912599)
chr8 (507-535)||(33974374-33974402)


Alignment Details
Target: chr5 (Bit Score: 607; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 1 - 671
Target Start/End: Complemental strand, 6732169 - 6731495
Alignment:
Q  1 ccagctcaacaagaaaagcttcagaagaaacttgatgctcttcactggcattcgtctgttgttgttccatttgagaataaaagggatttgatgaagctgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6732169 ccagctcaacaagaaaagcttcagaagaaacttgatgctcttgactggcattcgtctgttgttgttccatttgagaataaaagggatttgatgaagctgt 6732070  T
Q  101 tggttcttgcggaaaagattcatgggaatcaaataaggttttggtgtggtgctcctcaagttcctgaatttaccggaaggcttgaccttttcactgagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6732069 tggttcttgcggaaaagattcatgggaatcaaataaggttttggtgtggtgctcctcaagttcctgaatttactggaaggcttgaccttttcactgagtt 6731970  T
Q  201 gaagattgagttgctcaagtatggtgtttctgtgtttcttttgactggtttgggtgcttctgttaaacccactcttcaaatgaacctttcttgggatcca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6731969 gaagattgagttgctcaagtatggtgtttctgtgtttcttttgactggtttgggtgcttctgttaaacccactcttcaaatgaacctttcttgggatcca 6731870  T
Q  301 caaatccaaggtatttggaattcaatcataaaaattatccaaacaattttagttcatttcaata-----caattcattctcattgatttagaaagcnnnn 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||        
T  6731869 caaatccaaggtatttggaattcaatcataaaaattatccaaacaattttagttcatttcaatacaatacaattcattctcattgatttagaaagc-ttt 6731771  T
Q  396 nnnngtcttgactagccaaatttcgtggaaacatcttcgttgttgccgtctcaagaactcccaatttgaagtgcattgtacaaacactgtttgctcgctg 495  Q
        |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6731770 ttttgtcttgactagccaaatttcgtggaaacatcttcgttgttaccgtctcaagaactcccaatttgaagtacattgtacaaacactgtttgctcgctg 6731671  T
Q  496 tggactttggatgcctgagtttcaaagtgatgaagatgcaattaacgaattgggacttctattttggaaaattagtatatatccaatattattagtcttg 595  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6731670 tggactttggatgcctgagtttcaaagtgatgaagatgcaattaacgaattgggacttctattttggaaaattagtatatatccaatattattaatcttg 6731571  T
Q  596 gatgatgtttggcctggctcagaaagccttgttgataagttcagattccaattgccagattataagatcttatatt 671  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6731570 gatgatgtttggcctggctcagaaagccttgttgataagttcagattccaattgccagattataagatcttatatt 6731495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 420 - 663
Target Start/End: Complemental strand, 6716613 - 6716370
Alignment:
Q  420 gtggaaacatcttcgttgttgccgtctcaagaactcccaatttgaagtgcattgtacaaacactgtttgctcgctgtggactttggatgcctgagtttca 519  Q
    |||||||||||||| ||||| ||||||||| ||||||||| ||||||  |||||||||||| || || |  | |||||| ||| || |||||||||||||    
T  6716613 gtggaaacatcttctttgttaccgtctcaaaaactcccaacttgaagaacattgtacaaacgctattcgaacactgtgggcttcgggtgcctgagtttca 6716514  T
Q  520 aagtgatgaagatgcaattaacgaattgggacttctattttggaaaattagtatatatccaatattattagtcttggatgatgtttggcctggctcagaa 619  Q
    || ||||||||| || ||||||   |||||||||||  |  || || || | | | ||||||||||||||||||||||||||||||||||||||||||||    
T  6716513 aactgatgaagacgccattaaccggttgggacttctgctgaggcaagttgggagaaatccaatattattagtcttggatgatgtttggcctggctcagaa 6716414  T
Q  620 agccttgttgataagttcagattccaattgccagattataagat 663  Q
     |||||||||| | ||||| ||||||| ||||||||||||||||    
T  6716413 ggccttgttgagaggttcaaattccaaatgccagattataagat 6716370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 527 - 663
Target Start/End: Complemental strand, 6773947 - 6773811
Alignment:
Q  527 gaagatgcaattaacgaattgggacttctattttggaaaattagtatatatccaatattattagtcttggatgatgtttggcctggctcagaaagccttg 626  Q
    |||||||||||||||  ||||||| ||||  |  || || || ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6773947 gaagatgcaattaaccgattgggaattctgctgaggcaagttggtagatatccaatattattagtcttggatgatgtttggcctggctcagaaggccttg 6773848  T
Q  627 ttgataagttcagattccaattgccagattataagat 663  Q
    |||| ||||||| |||| |||||||||||||||||||    
T  6773847 ttgagaagttcaaattcaaattgccagattataagat 6773811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 580 - 660
Target Start/End: Complemental strand, 6738995 - 6738915
Alignment:
Q  580 aatattattagtcttggatgatgtttggcctggctcagaaagccttgttgataagttcagattccaattgccagattataa 660  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||    
T  6738995 aatattattagtcttggatgatgtttggcctggctcagaaagccttgttgagaagttcacattcaaattgccagattataa 6738915  T

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Target: chr5; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 580 - 660
Target Start/End: Complemental strand, 6749047 - 6748967
Alignment:
Q  580 aatattattagtcttggatgatgtttggcctggctcagaaagccttgttgataagttcagattccaattgccagattataa 660  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||    
T  6749047 aatattattagtcttggatgatgtttggcctggctcagaaaaccttgttgagaagttcaaattccaattgccagattataa 6748967  T

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Target: chr5; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 403 - 663
Target Start/End: Original strand, 7096767 - 7097027
Alignment:
Q  403 ttgactagccaaatttcgtggaaacatcttcgttgttgccgtctcaagaactcccaatttgaagtgcattgtacaaacactgtttgctcgctgtggactt 502  Q
    |||| ||| ||| ||| ||| |||||||||| ||||  || |||||| ||||||||| ||||||  |||||| ||  |||| ||||  | |||||||  |    
T  7096767 ttgaataggcaagtttggtgaaaacatcttctttgtcaccatctcaaaaactcccaacttgaagaacattgtgcaggcactatttgaacactgtggatgt 7096866  T
Q  503 tggatgcctgagtttcaaagtgatgaagatgcaattaacgaattgggacttctattttggaaaattagtatatatccaatattattagtcttggatgatg 602  Q
     || | || ||||||||||  ||||||||||||||||||  ||||||||| || ||  || || || ||| | |||||||| ||||||||||||||||||    
T  7096867 cgggttcccgagtttcaaaccgatgaagatgcaattaaccgattgggactactgttgaggcaagttggtagaaatccaatactattagtcttggatgatg 7096966  T
Q  603 tttggcctggctcagaaagccttgttgataagttcagattccaattgccagattataagat 663  Q
    ||||||||  ||||||| |||||||||| || |||| ||||||| || |||||||||||||    
T  7096967 tttggcctaactcagaaggccttgttgagaatttcaaattccaaatgtcagattataagat 7097027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 576 - 663
Target Start/End: Complemental strand, 6724374 - 6724287
Alignment:
Q  576 atccaatattattagtcttggatgatgtttggcctggctcagaaagccttgttgataagttcagattccaattgccagattataagat 663  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||  |||||||||||||||||||    
T  6724374 atccaatattattagtcttggatgatgtttggcctggctcagaaagccttgtggagaagttcaaatttaaattgccagattataagat 6724287  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 276
Target Start/End: Complemental strand, 6740716 - 6740511
Alignment:
Q  71 ttgagaataaaagggatttgatgaagctgttggttcttgcggaaaagattcatgggaatcaaataaggttttggtgtggtgctcctcaagttcctgaatt 170  Q
    ||||||||||||||||||||||| || |||||  || || | || | | ||||| ||||||||| |||  |  ||||||||||||||| |  ||||||||    
T  6740716 ttgagaataaaagggatttgatggaggtgttgactcatgtgaaagataatcatgtgaatcaaattaggggtctgtgtggtgctcctcaggagcctgaatt 6740617  T
Q  171 taccggaaggcttgaccttttcactgagttgaagattgagttgctcaagtatggtgtttctgtgtttcttttgactggtttgggtgcttctgttaaaccc 270  Q
    ||  |||| | || | |  || | |||||||||| |||| ||| | ||| |||||| ||||||| || ||||||||||||||||||  |||| |||| ||    
T  6740616 tattggaatggttaagcaatttaatgagttgaaggttgaattgatgaaggatggtgcttctgtgcttgttttgactggtttgggtggatctggtaaaacc 6740517  T
Q  271 actctt 276  Q
    ||||||    
T  6740516 actctt 6740511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 313
Target Start/End: Original strand, 7095671 - 7095787
Alignment:
Q  197 agttgaagattgagttgctcaagtatggtgtttctgtgtttcttttgactggtttgggtgcttctgttaaacccactcttcaaatgaacctttcttggga 296  Q
    ||||||||||||| ||| | ||  |||||||||||||| || ||||||||||||||||||  |||| |||| ||||||||   | ||| || | ||||||    
T  7095671 agttgaagattgaattgatgaaagatggtgtttctgtgcttgttttgactggtttgggtggatctggtaaaaccactcttgctaagaagctctgttggga 7095770  T
Q  297 tccacaaatccaaggta 313  Q
     ||||||||| ||||||    
T  7095771 accacaaatcaaaggta 7095787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 6749652 - 6749593
Alignment:
Q  197 agttgaagattgagttgctcaagtatggtgtttctgtgtttcttttgactggtttgggtg 256  Q
    ||||||||||||||||| | ||| |||||||||||||  || ||||||||||||||||||    
T  6749652 agttgaagattgagttgatgaaggatggtgtttctgtactttttttgactggtttgggtg 6749593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 353 - 600
Target Start/End: Complemental strand, 6762091 - 6761852
Alignment:
Q  353 ttcatttcaatacaattcattctcattgatttagaaagcnnnnnnnngtcttgactagccaaatttcgtggaaacatcttcgttgttgccgtctcaagaa 452  Q
    |||||||||||| ||| | ||||| ||||||||||||||        || |||||||| ||| ||| || |||||||||||  |||   | |||||||||    
T  6762091 ttcatttcaataaaatcctttctccttgatttagaaagctatttt--gttttgactaggcaagtttggtagaaacatcttctatgtccgcctctcaagaa 6761994  T
Q  453 ctcccaatttgaagtgcattgtacaaacactgtttg-ctcgctgtggactttggatgcctgagtttcaaagtgatgaagatgcaattaacgaattgggac 551  Q
    ||||||| ||||||  ||||||||| ||| |  ||| |||  |||||| ||||| |||| ||||||||||   | |||||||||||| ||  ||||||||    
T  6761993 ctcccaacttgaagaacattgtacagacaataattgactca-tgtggattttgggtgccggagtttcaaa---acgaagatgcaattgacatattgggac 6761898  T
Q  552 ttctattttggaaaattagtatatatccaatattattagtcttggatga 600  Q
    |||||||| || ||||| |   || ||||||||||||| ||||||||||    
T  6761897 ttctatttagggaaattgg---atttccaatattattactcttggatga 6761852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 632 - 670
Target Start/End: Complemental strand, 6761850 - 6761812
Alignment:
Q  632 aagttcagattccaattgccagattataagatcttatat 670  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  6761850 aagttcaaattccaattgccagattataagatcttatat 6761812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 276
Target Start/End: Complemental strand, 6725491 - 6725410
Alignment:
Q  195 tgagttgaagattgagttgctcaagtatggtgtttctgtgtttcttttgactggtttgggtgcttctgttaaacccactctt 276  Q
    |||||||||| |||| ||| | ||| |||||| ||||||| || ||||||||||||||||||  |||| |||| ||||||||    
T  6725491 tgagttgaaggttgaattgatgaaggatggtgcttctgtgcttgttttgactggtttgggtggatctggtaaaaccactctt 6725410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 6724665 - 6724617
Alignment:
Q  313 atttggaattcaatcataaaaattatccaaacaattttagttcatttca 361  Q
    |||||| ||||||||||||||| |||||| ||||||||| |||||||||    
T  6724665 atttggcattcaatcataaaaaatatccatacaattttatttcatttca 6724617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 507 - 555
Target Start/End: Complemental strand, 6749120 - 6749072
Alignment:
Q  507 tgcctgagtttcaaagtgatgaagatgcaattaacgaattgggacttct 555  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||| |||    
T  6749120 tgcctgattttcaaagtaacgaagatgcaattaaccaattgggacatct 6749072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 577 - 619
Target Start/End: Original strand, 33912557 - 33912599
Alignment:
Q  577 tccaatattattagtcttggatgatgtttggcctggctcagaa 619  Q
    ||||||||| |||||| |||||||||||||||| |||||||||    
T  33912557 tccaatattgttagtcctggatgatgtttggcccggctcagaa 33912599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 507 - 535
Target Start/End: Original strand, 33974374 - 33974402
Alignment:
Q  507 tgcctgagtttcaaagtgatgaagatgca 535  Q
    |||||||||||||||||||||||||||||    
T  33974374 tgcctgagtttcaaagtgatgaagatgca 33974402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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