View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13954_low_11 (Length: 246)
Name: NF13954_low_11
Description: NF13954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13954_low_11 |
 | |
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| [»] chr3 (7 HSPs) |
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| [»] chr6 (7 HSPs) |
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| [»] chr1 (10 HSPs) |
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| [»] chr2 (4 HSPs) |
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| [»] scaffold0713 (1 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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| [»] scaffold0654 (2 HSPs) |
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| [»] scaffold0002 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 5705400 - 5705167
Alignment:
| Q |
13 |
attcttttggtaggtctcctctatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttgagttgtataaacatct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5705400 |
attcttttggtaggtctcctctatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttgagttgtataaacatct |
5705301 |
T |
|
| Q |
113 |
agttatgtcactttgggattctgctgataatacaagtatatagataggattcatatcttggaaagtattcaaaatatagaggatactttgtcgaaatttc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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|
| T |
5705300 |
agttatgtcactttgggattctgctgataatacaagtatatagacaggattcatatcttggaaagtattcaaaatatagagaatactttgtcaaaatttc |
5705201 |
T |
|
| Q |
213 |
agtgtatatcattctaagtgaaagtcagtttgaa |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
5705200 |
agtgtatatcattctaagtgaaagtcagtttgaa |
5705167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 28104178 - 28104411
Alignment:
| Q |
13 |
attcttttggtaggtctcctctatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttgagttgtataaacatct |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| | |||||||||||||||||||||||| | |||||||||||||||| ||||| |||||||| |
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|
| T |
28104178 |
attcttttggtaggtctcctatatgtatgaactgaatgatcaatgtatctgcagctattggtagtctagaaatgttttgttttgaattgtacaaacatct |
28104277 |
T |
|
| Q |
113 |
agttatgtcactttgggattctgctgataatacaagtatatagataggattcatatcttggaaagtattcaaaatatagaggatactttgtcgaaatttc |
212 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||| || |||||||||| |||||| ||||| ||||||| | |||||||| |||||||||||| |
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|
| T |
28104278 |
agttatgtcaatttgagattctgctgataatacaagtatatggacaggattcataccttggatagtatccaaaatacaaaggatactctgtcgaaatttc |
28104377 |
T |
|
| Q |
213 |
agtgtatatcattctaagtgaaagtcagtttgaa |
246 |
Q |
| |
|
| || |||||||| ||||||||||||| |||||| |
|
|
| T |
28104378 |
attggatatcattttaagtgaaagtcaatttgaa |
28104411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 28058292 - 28058208
Alignment:
| Q |
13 |
attcttttggtaggtctcctctatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttga |
97 |
Q |
| |
|
|||||||||||||||||||| ||||||| || |||||||| ||||||||||||||||||||||||| | ||||| ||||||||| |
|
|
| T |
28058292 |
attcttttggtaggtctcctatatgtatgaaatgaatggtcgatgtatctgcagctattggtagtctagaaatgaattgttttga |
28058208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 28068717 - 28068633
Alignment:
| Q |
13 |
attcttttggtaggtctcctctatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttga |
97 |
Q |
| |
|
|||||||||||||||||||| ||||||| || |||||||| ||||||||||||||||||||||||| | ||||| ||||||||| |
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|
| T |
28068717 |
attcttttggtaggtctcctatatgtatgaaatgaatggtcgatgtatctgcagctattggtagtctagaaatgaattgttttga |
28068633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 246
Target Start/End: Complemental strand, 28058200 - 28058112
Alignment:
| Q |
158 |
aggattcatatcttggaaagtattcaaaatatagaggatactttgtcgaaatttcagtgtatatcattctaagtgaaagtcagtttgaa |
246 |
Q |
| |
|
|||||| |||||||||| ||||| ||||||| | |||||||| ||||||||||||| || |||||||| ||||||||||| | |||||| |
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|
| T |
28058200 |
aggatttatatcttggatagtatccaaaatacaaaggatactctgtcgaaatttcattggatatcattttaagtgaaagtaaatttgaa |
28058112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 246
Target Start/End: Complemental strand, 28068625 - 28068537
Alignment:
| Q |
158 |
aggattcatatcttggaaagtattcaaaatatagaggatactttgtcgaaatttcagtgtatatcattctaagtgaaagtcagtttgaa |
246 |
Q |
| |
|
|||||| |||||||||| ||||| ||||||| | |||||||| ||||||||||||| || |||||||| ||||||||||| | |||||| |
|
|
| T |
28068625 |
aggatttatatcttggatagtatccaaaatacaaaggatactctgtcgaaatttcattggatatcattttaagtgaaagtaaatttgaa |
28068537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 19435537 - 19435600
Alignment:
| Q |
168 |
tcttggaaagtattcaaaatatagaggatactttgtcgaaatttcagtgtatatcattctaagt |
231 |
Q |
| |
|
||||||||| ||||||||||| ||||||| || |||||||||||||||| |||||||| ||||| |
|
|
| T |
19435537 |
tcttggaaaatattcaaaatacagaggatgctctgtcgaaatttcagtggatatcattttaagt |
19435600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 33063475 - 33063708
Alignment:
| Q |
13 |
attcttttggtaggtctcctctatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttgagttgtataaacatct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33063475 |
attcttttggtaggtctcctctatgtataaactgaatggtcgatgtatctgcagctattggcagtcgacaaatgttttgttttgagctgtataaacatct |
33063574 |
T |
|
| Q |
113 |
agttatgtcactttgggattctgctgataatacaagtatatagataggattcatatcttggaaagtattcaaaatatagaggatactttgtcgaaatttc |
212 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
33063575 |
agttatgtcactttgagattctgctgataatacaagtatatagacaagattcacatcttggaaagtattcaaaatatagaggatactctgtcgaaatctc |
33063674 |
T |
|
| Q |
213 |
agtgtatatcattctaagtgaaagtcagtttgaa |
246 |
Q |
| |
|
|||| |||||||| ||||||||||||| |||||| |
|
|
| T |
33063675 |
agtggatatcattttaagtgaaagtcaatttgaa |
33063708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 33055996 - 33056222
Alignment:
| Q |
13 |
attcttttggtaggtctcctctatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttgagttgtataaacatct |
112 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33055996 |
attcttttggtaggtctcatctatgtataaactgaatggtcgatgtatctgcagctattggcagtcgacaaatgttttgttttgagctgtataaacatct |
33056095 |
T |
|
| Q |
113 |
agttatgtcactttgggattctgctgataatacaagtatatagataggattcatatcttggaaagtattcaaaatatagaggatactttgtcgaaatttc |
212 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
33056096 |
agttatgtcactttgagattctgttgataatacaagtatatagacaagattcatatcttggaaagtattcaaaatatagaggatactctgtcgaaatctc |
33056195 |
T |
|
| Q |
213 |
agtgtatatcattctaagtgaaagtca |
239 |
Q |
| |
|
| || |||||||| ||||||||||||| |
|
|
| T |
33056196 |
aatggatatcattttaagtgaaagtca |
33056222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 30130710 - 30130935
Alignment:
| Q |
21 |
ggtaggtctcctctatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttgagttgtataaacatctagttatgt |
120 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30130710 |
ggtaggtctactctatgtataaactgaatggtcgatgtatctgcagctattggtagtcgacagatgttttgttttgagttgtataaacatctagttatgt |
30130809 |
T |
|
| Q |
121 |
cactttgggattctgctgataatacaagtatatagataggattcatatcttggaaagtattcaaaatatagaggatactttgtcgaaatttcagtgtata |
220 |
Q |
| |
|
||||||| |||| ||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
30130810 |
cactttgagattttgctgatgatacaagtatatagacaagattcatatcttggaaagtattcaaaatatagaggatactctgtcgaaatttcagtggata |
30130909 |
T |
|
| Q |
221 |
tcattctaagtgaaagtcagtttgaa |
246 |
Q |
| |
|
|||| ||||||||||||| |||||| |
|
|
| T |
30130910 |
acattataagtgaaagtcaatttgaa |
30130935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 27527610 - 27527843
Alignment:
| Q |
13 |
attcttttggtaggtctcctctatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttgagttgtataaacatct |
112 |
Q |
| |
|
||||||||||||||| |||| | ||||| ||||||||||| |||||||||||| |||||| ||||| | |||||||||||||| | |||||||||||||| |
|
|
| T |
27527610 |
attcttttggtaggtttcctatgtgtatgaactgaatggtcgatgtatctgcaactattgatagtctagaaatgttttgttttaaattgtataaacatct |
27527709 |
T |
|
| Q |
113 |
agttatgtcactttgggattctgctgataatacaagtatatagataggattcatatcttggaaagtattcaaaatatagaggatactttgtcgaaatttc |
212 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||| |||||| ||||| | |||| |||||||||||||||| |
|
|
| T |
27527710 |
agttatgtcactttgagattctgctgataatacaagtatatagaaagaattcatatcttggatagtattaaaaattcaaaggacactttgtcgaaatttc |
27527809 |
T |
|
| Q |
213 |
agtgtatatcattctaagtgaaagtcagtttgaa |
246 |
Q |
| |
|
| || |||||||| ||||||||||||| |||||| |
|
|
| T |
27527810 |
attggatatcattttaagtgaaagtcaatttgaa |
27527843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 15970120 - 15970072
Alignment:
| Q |
165 |
atatcttggaaagtattcaaaatatagaggatactttgtcgaaatttca |
213 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15970120 |
atatcttggaaaatattcaaaatagagaggatactttgtcgaaatttca |
15970072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 28041236 - 28041299
Alignment:
| Q |
168 |
tcttggaaagtattcaaaatatagaggatactttgtcgaaatttcagtgtatatcattctaagt |
231 |
Q |
| |
|
||||||||| ||||||||||| ||||||| || |||||||||||||||| |||||||| ||||| |
|
|
| T |
28041236 |
tcttggaaaatattcaaaatacagaggatgctctgtcgaaatttcagtggatatcattttaagt |
28041299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 6952580 - 6952663
Alignment:
| Q |
15 |
tcttttggtaggtctcctctatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttgag |
98 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| ||| |||||||||||||||| | |||| | |||||||| ||||||| |
|
|
| T |
6952580 |
tcttttggtaggtctcctttgtgtataaactgaacaattggtgtatctgcagctatttggagtctatgaatgttttattttgag |
6952663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 16104564 - 16104797
Alignment:
| Q |
13 |
attcttttggtaggtctcctctatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttgagttgtataaacatct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
16104564 |
attcttttggtaggtctcctctatgtataaactgaatggtcgatgtatctgcagctattggtagttgaaaaatgttttgttttgagttgtataaacatct |
16104663 |
T |
|
| Q |
113 |
agttatgtcactttgggattctgctgataatacaagtatatagataggattcatatcttggaaagtattcaaaatatagaggatactttgtcgaaatttc |
212 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| | ||||||| |||| |
|
|
| T |
16104664 |
agttatgtcactttgagattctgttgataatacaagtatatagacagaattcatatcttggaaagtattcaaaatatagaggatattctgtcgaattttc |
16104763 |
T |
|
| Q |
213 |
agtgtatatcattctaagtgaaagtcagtttgaa |
246 |
Q |
| |
|
|||| |||||||| ||||||||||||| |||||| |
|
|
| T |
16104764 |
agtggatatcattttaagtgaaagtcaatttgaa |
16104797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 16101106 - 16101334
Alignment:
| Q |
13 |
attcttttggtaggtctcctctatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttgagttgtataaacatct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
16101106 |
attcttttggtaggtctcctctatgtataaactgaatggtcgatgtatctgcagctattggtagttgaaaaatgttttgttttgagttgtataaacatct |
16101205 |
T |
|
| Q |
113 |
agttatgtcactttgggattctgctgataatacaagtatatagataggattcatatcttggaaagtattc-aaaatatagaggatactttgtcgaaattt |
211 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||| | ||||||||||| |
|
|
| T |
16101206 |
agttatgtcactttgagattctgttgataatacaagtatatagacagaattcatatcttggaaagtattcaaaaatatagaggatattctgtcgaaattt |
16101305 |
T |
|
| Q |
212 |
cagt-gtatatcattctaagtgaaagtca |
239 |
Q |
| |
|
|||| | |||||||| ||||||||||||| |
|
|
| T |
16101306 |
cagtggaatatcattttaagtgaaagtca |
16101334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 19657227 - 19656991
Alignment:
| Q |
13 |
attcttttgg-taggtctcctc--tatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttgagttgtataaaca |
109 |
Q |
| |
|
|||||||||| ||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19657227 |
attcttttgggtaggtctcctccctttgtataaactgaatggtcgatgtatctgcagctattggtagtcgacaaatgttttgttttgagttgtataaaca |
19657128 |
T |
|
| Q |
110 |
tctagttatgtcactttgggattctgctgataatacaagtatatagataggattcatatcttggaaagtattcaaaatatagaggatactttgtcgaaat |
209 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
19657127 |
tctagttatgtcactttgagattctgctgataatacaagtatataggcaggattcatatcttggaaagtattcaaaatatagagcatacgctgtcgaaat |
19657028 |
T |
|
| Q |
210 |
ttcagtgtatatcattctaagtgaaagtcagtttgaa |
246 |
Q |
| |
|
||| ||| |||||||| ||||||||||| | |||||| |
|
|
| T |
19657027 |
ttctgtggatatcattataagtgaaagtaaatttgaa |
19656991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 14650632 - 14650866
Alignment:
| Q |
13 |
attcttttggtaggtctcctctatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttgagttgtataaacatct |
112 |
Q |
| |
|
|||||||||||||||||||| | ||||| ||||||||||| |||||||| |||||||||| ||||| | |||| ||||||||||| |||||||||||||| |
|
|
| T |
14650632 |
attcttttggtaggtctcctatgtgtatgaactgaatggtcgatgtatccgcagctattgatagtctagaaatattttgttttgaattgtataaacatct |
14650731 |
T |
|
| Q |
113 |
agttatgtcactttgggattctgctgataatacaagtatatagataggattcatatcttggaaagtatt-caaaatatagaggatactttgtcgaaattt |
211 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||| |||||| ||||| | |||| ||| ||||||||||| |
|
|
| T |
14650732 |
agttatgtcactttgagattctgctgataatacaagtatatagacagaattcatatcttggatagtattaaaaaattcaaaggacactctgtcgaaattt |
14650831 |
T |
|
| Q |
212 |
cagtgtatatcattctaagtgaaagtcagtttgaa |
246 |
Q |
| |
|
|| || |||||||| ||||||||||||| |||||| |
|
|
| T |
14650832 |
cattgaatatcattttaagtgaaagtcaatttgaa |
14650866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 14660423 - 14660657
Alignment:
| Q |
13 |
attcttttggtaggtctcctctatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttgagttgtataaacatct |
112 |
Q |
| |
|
|||||||||||||||||||| | ||||| ||||||||||| |||||||| |||||||||| ||||| | |||| ||||||||||| |||||||||||||| |
|
|
| T |
14660423 |
attcttttggtaggtctcctatgtgtatgaactgaatggtcgatgtatccgcagctattgatagtctagaaatattttgttttgaattgtataaacatct |
14660522 |
T |
|
| Q |
113 |
agttatgtcactttgggattctgctgataatacaagtatatagataggattcatatcttggaaagtatt-caaaatatagaggatactttgtcgaaattt |
211 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||| |||||| ||||| | |||| ||| ||||||||||| |
|
|
| T |
14660523 |
agttatgtcactttgagattctgctgataatacaagtatatagacagaattcatatcttggatagtattaaaaaattcaaaggacactctgtcgaaattt |
14660622 |
T |
|
| Q |
212 |
cagtgtatatcattctaagtgaaagtcagtttgaa |
246 |
Q |
| |
|
|| || |||||||| ||||||||||||| |||||| |
|
|
| T |
14660623 |
cattgaatatcattttaagtgaaagtcaatttgaa |
14660657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 82 - 246
Target Start/End: Original strand, 14654701 - 14654866
Alignment:
| Q |
82 |
aaatgttttgttttgagttgtataaacatctagttatgtcactttgggattctgctgataatacaagtatatagataggattcatatcttggaaagtatt |
181 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||| |||||| |
|
|
| T |
14654701 |
aaatattttgttttgaattgtataaacatctagttatgtcactttgagattctgctgataatacaagtatatagacagaattcatatcttggatagtatt |
14654800 |
T |
|
| Q |
182 |
-caaaatatagaggatactttgtcgaaatttcagtgtatatcattctaagtgaaagtcagtttgaa |
246 |
Q |
| |
|
||||| | |||| ||| ||||||||||||| || |||||||| ||||||||||||| |||||| |
|
|
| T |
14654801 |
aaaaaattcaaaggacactctgtcgaaatttcattgaatatcattttaagtgaaagtcaatttgaa |
14654866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 244
Target Start/End: Complemental strand, 20111372 - 20111212
Alignment:
| Q |
85 |
tgttttgttttgagttgtataaacatctagttatgtcactttgggattc-tgctgataatacaagtatatagataggattcatatcttggaaagtattca |
183 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||| ||||| || |||||||| || | || | | | ||||||||||||| ||| | | | |
|
|
| T |
20111372 |
tgttttgttttgagttgtacaaacatttagttatgtcactttgagattcttggtgataatataaatttacatacatgattcatatcttgaaaaattgtga |
20111273 |
T |
|
| Q |
184 |
aaatatagaggatactttgtcgaaatttcagtgtatatcattctaagtgaaagtcagtttg |
244 |
Q |
| |
|
||||| | |||||||| | || ||||| ||||| ||||| ||||||||||||| |||| |
|
|
| T |
20111272 |
aaatacaaaggatactctatcaaaattccagtgggtatcaaattaagtgaaagtcaatttg |
20111212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 244
Target Start/End: Complemental strand, 17478506 - 17478319
Alignment:
| Q |
58 |
tatctgcagctattggtagtcgacaaatgttttgttttgagttgtataaacatctagttatgtcactttgggattctgc-tgataatacaagtatataga |
156 |
Q |
| |
|
|||||||||||||| | |||| | |||||||| ||||||| |||| ||| || || ||||||| |||| | |||| ||| |||||| || ||| | |
|
|
| T |
17478506 |
tatctgcagctatttggagtctaggaatgttttattttgagatgtacaaatatgtaaatatgtcattttgaaactctggatgagaatacaggttcataaa |
17478407 |
T |
|
| Q |
157 |
taggattcatatcttggaaagtattcaaaatatagaggatactttgtcgaaatttcagtgtatatcattctaagtgaaagtcagtttg |
244 |
Q |
| |
|
|||||| | |||||||||| |||||||| || ||| |||||| |||| |||||||||| |||||||| ||||||||||||| |||| |
|
|
| T |
17478406 |
caggattaaaatcttggaaaatattcaaattacagatgatactatgtcaaaatttcagtagatatcattttaagtgaaagtcaatttg |
17478319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 29287877 - 29287814
Alignment:
| Q |
168 |
tcttggaaagtattcaaaatatagaggatactttgtcgaaatttcagtgtatatcattctaagt |
231 |
Q |
| |
|
||||||||| ||||||||||| ||||||| || |||||||||||||||| |||||||| ||||| |
|
|
| T |
29287877 |
tcttggaaaatattcaaaatacagaggatgctctgtcgaaatttcagtggatatcattttaagt |
29287814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 47050222 - 47050159
Alignment:
| Q |
168 |
tcttggaaagtattcaaaatatagaggatactttgtcgaaatttcagtgtatatcattctaagt |
231 |
Q |
| |
|
||||||||| ||||||||||| ||||||| || |||||||||||||||| |||||||| ||||| |
|
|
| T |
47050222 |
tcttggaaaatattcaaaatacagaggatgctctgtcgaaatttcagtggatatcattttaagt |
47050159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 10416305 - 10416539
Alignment:
| Q |
13 |
attcttttggtaggtctcctctatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttgagttgtataaacatct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
10416305 |
attcttttggtaggtctcctctatgtataaactgaatggtcgatgtatctgcagctattggtagttgaaaaatgttttgttttgagttgtataaacatct |
10416404 |
T |
|
| Q |
113 |
agttatgtcactttgggattctgctgataatacaagtatatagataggattcatatcttggaaagtattc-aaaatatagaggatactttgtcgaaattt |
211 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| | ||| ||||||| |
|
|
| T |
10416405 |
agttatgtcactttgagattctgttgataatacaagtatatagacaggattcatatcttggaaagtattcaaaaatatagaggatattctgtggaaattt |
10416504 |
T |
|
| Q |
212 |
cagtgtatatcattctaagtgaaagtcagtttgaa |
246 |
Q |
| |
|
||||| |||||||| ||||||||||||| |||||| |
|
|
| T |
10416505 |
cagtggatatcattttaagtgaaagtcaatttgaa |
10416539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 4698270 - 4698495
Alignment:
| Q |
21 |
ggtaggtctcctctatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttgagttgtataaacatctagttatgt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4698270 |
ggtaggtctcctctatgtataaactgaatggtgtatgtagctgcagctattggtagtcgacaaatgttttgttttgagttgtataaacatctagttatgt |
4698369 |
T |
|
| Q |
121 |
cactttgggattctgctgataatacaagtatatagataggattcatatcttggaaagtattcaaaatatagaggatactttgtcgaaatttcagtgtata |
220 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| |
|
|
| T |
4698370 |
cactttgagattctgctgataatacaagtatatagacaagattcatatcttggaaagtattcaaaatatagaggatactatgtcaaaatttcagtggata |
4698469 |
T |
|
| Q |
221 |
tcattctaagtgaaagtcagtttgaa |
246 |
Q |
| |
|
||||| |||||||||||| |||||| |
|
|
| T |
4698470 |
tcattacaagtgaaagtcaatttgaa |
4698495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 808509 - 808291
Alignment:
| Q |
15 |
tcttttggtaggtctcctctatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttgagttgtataaacatctag |
114 |
Q |
| |
|
||||||||||||| |||| | | ||||||||||||||| ||||||||||||||||||||||||| | || |||| |||| |||||||| |||||||||| |
|
|
| T |
808509 |
tcttttggtaggtttcctatgtatataaactgaatggtcgatgtatctgcagctattggtagtctagaattgttctgtt--gagttgtacaaacatctag |
808412 |
T |
|
| Q |
115 |
ttatgtcactttgggattctgct-gataatacaagtatatagataggattcatatcttggaaagtattcaaaatatagaggatactttgtcgaaatttca |
213 |
Q |
| |
|
|||||| |||||| ||||||| | |||||||||||| |||||| ||||||||||||||||||| |||||||| || |||||||||| ||| ||||||||| |
|
|
| T |
808411 |
ttatgttactttgagattctggttgataatacaagtttatagacaggattcatatcttggaaaatattcaaagtacagaggatactctgttgaaatttca |
808312 |
T |
|
| Q |
214 |
gtgtatatcattctaagtgaa |
234 |
Q |
| |
|
||| |||||||| ||| |||| |
|
|
| T |
808311 |
gtggatatcattttaaatgaa |
808291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 2588360 - 2588423
Alignment:
| Q |
168 |
tcttggaaagtattcaaaatatagaggatactttgtcgaaatttcagtgtatatcattctaagt |
231 |
Q |
| |
|
||||||||| |||| |||||| ||||||| || |||||||||||||||| |||||||| ||||| |
|
|
| T |
2588360 |
tcttggaaaatatttaaaatacagaggatgctctgtcgaaatttcagtggatatcattttaagt |
2588423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 15925300 - 15925520
Alignment:
| Q |
13 |
attcttttggtaggtctcctctatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttgagttgtataaacatct |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||| |||||||||||||||| ||||||| |
|
|
| T |
15925300 |
attctattggtaggtctcctctatgtataaactgaatggtcgatgtatctgcagctattggtagtctagaaatgctttgttttgagttgtacaaacatcc |
15925399 |
T |
|
| Q |
113 |
agttatgtcactttgggattctgctgataatacaagtatatagataggattcatatcttggaaagtattcaaaatatagaggatactttgtcgaaatttc |
212 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| | || |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
15925400 |
agttatgtcactttgagattctgttgataataaaggtgtatagacaggattcatatcttggaaagtattcaaaatatagaggatactctgtcgaaattcc |
15925499 |
T |
|
| Q |
213 |
agtgtatatcattctaagtga |
233 |
Q |
| |
|
|||| |||||||| ||||||| |
|
|
| T |
15925500 |
agtggatatcattttaagtga |
15925520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 28602946 - 28602728
Alignment:
| Q |
15 |
tcttttggtaggtctcctctatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttgagttgtataaacatctag |
114 |
Q |
| |
|
||||||||||||| |||| | |||||||| |||||||| ||||||||||||||||||||||||| | || ||||||||| |||||||| |||||||| | |
|
|
| T |
28602946 |
tcttttggtaggtttcctatgtgtataaattgaatggtcgatgtatctgcagctattggtagtctagaactgttttgtt--gagttgtacaaacatctgg |
28602849 |
T |
|
| Q |
115 |
ttatgtcactttgggattctg-ctgataatacaagtatatagataggattcatatcttggaaagtattcaaaatatagaggatactttgtcgaaatttca |
213 |
Q |
| |
|
||||| |||||| |||| || |||||||||||||| |||||| ||||||||||||||||||| ||||| ||||| |||||||||| ||| ||||||||| |
|
|
| T |
28602848 |
ctatgttactttgagattatggctgataatacaagtttatagacaggattcatatcttggaaaatattctaaatacagaggatactctgttgaaatttca |
28602749 |
T |
|
| Q |
214 |
gtgtatatcattctaagtgaa |
234 |
Q |
| |
|
||| |||||||| |||||||| |
|
|
| T |
28602748 |
gtggatatcattttaagtgaa |
28602728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 4706483 - 4706265
Alignment:
| Q |
15 |
tcttttggtaggtctcctctatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttgagttgtataaacatctag |
114 |
Q |
| |
|
||||||||||||| |||| | | |||||| |||||||| |||||||||||| |||||||||||| | || |||| |||| |||||||| |||||||||| |
|
|
| T |
4706483 |
tcttttggtaggtttcctatgtatataaattgaatggtcgatgtatctgcaactattggtagtctagaactgttctgtt--gagttgtacaaacatctag |
4706386 |
T |
|
| Q |
115 |
ttatgtcactttgggattctgct-gataatacaagtatatagataggattcatatcttggaaagtattcaaaatatagaggatactttgtcgaaatttca |
213 |
Q |
| |
|
|||||| |||||| ||||||| | |||||||||||| |||||||||||||||||||||||||| |||||||| || |||||||||| ||| ||||||||| |
|
|
| T |
4706385 |
ttatgttactttgagattctggttgataatacaagtttatagataggattcatatcttggaaaatattcaaagtacagaggatactctgttgaaatttca |
4706286 |
T |
|
| Q |
214 |
gtgtatatcattctaagtgaa |
234 |
Q |
| |
|
||| |||||||| ||| |||| |
|
|
| T |
4706285 |
gtggatatcattttaaatgaa |
4706265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 28803919 - 28804141
Alignment:
| Q |
13 |
attcttttggtaggtctcctctatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttgagttgtataaacatct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||| |||||||||||||||| ||||||| |
|
|
| T |
28803919 |
attcttttggtaggtctcctctatgtataaactgaatggtcgatgtatctgcagctattggtagtctagaaatgctttgttttgagttgtacgaacatct |
28804018 |
T |
|
| Q |
113 |
agttatgtcactttgggattctgctgataatacaagtatatagataggattcatatcttggaaagtattcaaaatatagaggatactttgtcgaaatttc |
212 |
Q |
| |
|
||||||||||||||| |||| || |||||||| | ||||||||| | ||||||||||||| |||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
28804019 |
agttatgtcactttgagattatgttgataataaaggtatatagacatgattcatatcttgaaaagtattcaaaatatagagaataccttgtcgaaatttc |
28804118 |
T |
|
| Q |
213 |
agtgtatatcattctaagtgaaa |
235 |
Q |
| |
|
|||| |||||||| ||||||||| |
|
|
| T |
28804119 |
agtggatatcattttaagtgaaa |
28804141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 26525279 - 26525383
Alignment:
| Q |
135 |
gctgataatacaagtatatagataggattcatatcttggaaagtattcaaaatatagaggatactttgtcgaaatttcagtgtatatcattctaagtgaa |
234 |
Q |
| |
|
|||||||||||| ||||||||| | ||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||| |||||||| |||||| | |
|
|
| T |
26525279 |
gctgataatacaggtatatagacatgattcatatctaggaaaatattcaaaatacagaggatactctgtcgaaatttcagaagatatcattttaagtgga |
26525378 |
T |
|
| Q |
235 |
agtca |
239 |
Q |
| |
|
||||| |
|
|
| T |
26525379 |
agtca |
26525383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0713
Description:
Target: scaffold0713; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 1075 - 1308
Alignment:
| Q |
13 |
attcttttggtaggtctcctctatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttgagttgtataaacatct |
112 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||||||| || ||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| |
|
|
| T |
1075 |
attcttttggtaggtctcctatgtgtatgaactgaattgtcgatgtatctgcagctattggtagtctagaaatgttttgttttgaattgtataaacatct |
1174 |
T |
|
| Q |
113 |
agttatgtcactttgggattctgctgataatacaagtatatagataggattcatatcttggaaagtattcaaaatatagaggatactttgtcgaaatttc |
212 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||| |||||| ||||| | |||| ||| |||||||||||| |
|
|
| T |
1175 |
agttatgtcactttgagattctgctgataatacaagtatatagacagaattcatatcttggatagtattaaaaattcaaaggacactctgtcgaaatttc |
1274 |
T |
|
| Q |
213 |
agtgtatatcattctaagtgaaagtcagtttgaa |
246 |
Q |
| |
|
| || |||||||| |||||| |||||| |||||| |
|
|
| T |
1275 |
attggatatcattttaagtgtaagtcaatttgaa |
1308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 42785853 - 42786071
Alignment:
| Q |
15 |
tcttttggtaggtctcctctatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttgagttgtataaacatctag |
114 |
Q |
| |
|
||||||||||||| |||| | | |||||| |||||||| ||||||||||||||||||||||||| | || |||| |||| |||||||| |||||||||| |
|
|
| T |
42785853 |
tcttttggtaggtttcctatgtatataaattgaatggtcgatgtatctgcagctattggtagtctagaactgttctgtt--gagttgtacaaacatctag |
42785950 |
T |
|
| Q |
115 |
ttatgtcactttgggattctgct-gataatacaagtatatagataggattcatatcttggaaagtattcaaaatatagaggatactttgtcgaaatttca |
213 |
Q |
| |
|
|||||| |||||| ||||||| | |||||||||||| |||||| ||||||||||||||||||| |||||||| || |||||||||| ||| ||||||||| |
|
|
| T |
42785951 |
ttatgttactttgagattctggttgataatacaagtttatagacaggattcatatcttggaaaatattcaaagtacagaggatactctgttgaaatttca |
42786050 |
T |
|
| Q |
214 |
gtgtatatcattctaagtgaa |
234 |
Q |
| |
|
||| |||||||| ||| |||| |
|
|
| T |
42786051 |
gtggatatcattttaaatgaa |
42786071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 27198116 - 27197890
Alignment:
| Q |
13 |
attcttttggtaggtctcctctatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttgagttgtataaacatct |
112 |
Q |
| |
|
|||||||||||||||||||| | ||||| ||||||||| | ||| ||| | || |||||||| ||| | |||||||||||||||| |||||||||||||| |
|
|
| T |
27198116 |
attcttttggtaggtctcctatgtgtatgaactgaatgatcgatatatttacaactattggtggtctagaaatgttttgttttgaattgtataaacatct |
27198017 |
T |
|
| Q |
113 |
agttatgtcactttgggattctgctgataatacaagtatatagataggattcatatcttggaaagtattcaaaatatagaggatactttgtcgaaatttc |
212 |
Q |
| |
|
||||||||||||| | ||||||||| |||||||||||||||||| | |||||||||||||| |||||| ||||| | |||||||| |||||||| | |
|
|
| T |
27198016 |
agttatgtcacttagagattctgctaataatacaagtatatagacaaaattcatatcttggatagtattaaaaattcaaaggatactcggtcgaaatatt |
27197917 |
T |
|
| Q |
213 |
agtgtatatcattctaagtgaaagtca |
239 |
Q |
| |
|
| || |||||||| ||||||||||||| |
|
|
| T |
27197916 |
attggatatcattttaagtgaaagtca |
27197890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 5519306 - 5519089
Alignment:
| Q |
15 |
tcttttggtaggtctcctctatgtataaactgaatggttgatgtatctgcagctattggtagtcgacaaatgttttgttttgagttgtataaacatctag |
114 |
Q |
| |
|
||||||||||||| |||| |||||||||| |||||||| ||||||||||||||||||||||||| | || |||| |||| |||| ||| |||||||||| |
|
|
| T |
5519306 |
tcttttggtaggtttcctatatgtataaattgaatggtcgatgtatctgcagctattggtagtctagaactgttctgtt--gagt-gtacaaacatctag |
5519210 |
T |
|
| Q |
115 |
ttatgtcactttgggattctgct-gataatacaagtatatagataggattcatatcttggaaagtattcaaaatatagaggatactttgtcgaaatttca |
213 |
Q |
| |
|
||||| |||||| ||||||| | |||||||||||| |||||| |||||| |||| ||||||| ||||||||||| |||||||||| ||| ||||||||| |
|
|
| T |
5519209 |
ctatgttactttgagattctggtagataatacaagtttatagacaggatttatatattggaaaatattcaaaatacagaggatactctgttgaaatttca |
5519110 |
T |
|
| Q |
214 |
gtgtatatcattctaagtgaa |
234 |
Q |
| |
|
||| |||||||| |||||||| |
|
|
| T |
5519109 |
gtggatatcattttaagtgaa |
5519089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 67 - 246
Target Start/End: Complemental strand, 115544 - 115365
Alignment:
| Q |
67 |
ctattggtagtcgacaaatgttttgttttgagttgtataaacatctagttatgtcactttgggattctgctgataatacaagtatatagataggattcat |
166 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||||||||||| |||||| | ||||||| |
|
|
| T |
115544 |
ctattggtagtttagaaatgttttgttttgagttgtacaaacatctagttatgttactttgagatctggctgataatacaagtttatagacatgattcat |
115445 |
T |
|
| Q |
167 |
atcttggaaagtattcaaaatatagaggatactttgtcgaaatttcagtgtatatcattctaagtgaaagtcagtttgaa |
246 |
Q |
| |
|
|||||||||| ||||||||||| ||||| |||| |||||||||||||||| ||||||| ||||||||| ||| |||||| |
|
|
| T |
115444 |
atcttggaaaatattcaaaatacagagggtactatgtcgaaatttcagtgggtatcattttaagtgaaaatcaatttgaa |
115365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0654
Description:
Target: scaffold0654; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 67 - 235
Target Start/End: Complemental strand, 4239 - 4071
Alignment:
| Q |
67 |
ctattggtagtcgacaaatgttttgttttgagttgtataaacatctagttatgtcactttgggattct-gctgataatacaagtatatagataggattca |
165 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||| ||||||||||||| ||||||||| |||||| ||||||||||||||| |||||| | |||||| |
|
|
| T |
4239 |
ctattggtagtttagaaatgttttgttttgagttgtacaaacatctagttacgtcactttgagattctggctgataatacaagtttatagacatgattca |
4140 |
T |
|
| Q |
166 |
tatcttggaaagtattcaaaatatagaggatactttgtcgaaatttcagtgtatatcattctaagtgaaa |
235 |
Q |
| |
|
||||||||||| ||||||||| | | ||| |||| |||||||||||||||| |||||||| | ||||||| |
|
|
| T |
4139 |
tatcttggaaaatattcaaaagacaaagg-tactatgtcgaaatttcagtggatatcattttcagtgaaa |
4071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 67 - 235
Target Start/End: Complemental strand, 5593 - 5425
Alignment:
| Q |
67 |
ctattggtagtcgacaaatgttttgttttgagttgtataaacatctagttatgtcactttgggattct-gctgataatacaagtatatagataggattca |
165 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||| ||||||||||||| ||||||||| |||||| ||||||||||||||| |||||| | |||||| |
|
|
| T |
5593 |
ctattggtagtttagaaatgttttgttttgagttgtacaaacatctagttacgtcactttgagattctggctgataatacaagtttatagacatgattca |
5494 |
T |
|
| Q |
166 |
tatcttggaaagtattcaaaatatagaggatactttgtcgaaatttcagtgtatatcattctaagtgaaa |
235 |
Q |
| |
|
||||||||||| ||||||||| | | ||| |||| |||||||||||||||| |||||||| | ||||||| |
|
|
| T |
5493 |
tatcttggaaaatattcaaaagacaaagg-tactatgtcgaaatttcagtggatatcattttcagtgaaa |
5425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 221
Target Start/End: Complemental strand, 30874157 - 30874018
Alignment:
| Q |
83 |
aatgttttgttttgagttgtataaacatctagttatgtcactttgggattctg-ctgataatacaagtatatagataggattcatatcttggaaagtatt |
181 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| || ||||| |||||| |||||||||||||| |||||| | |||||||| |||||||| |||| |
|
|
| T |
30874157 |
aatgttttattttgagttgtgcaaacatctagttatttctctttgagattctcactgataatacaagtttatagacatgattcataccttggaaaatatt |
30874058 |
T |
|
| Q |
182 |
caaaatatagaggatactttgtcgaaatttcagtgtatat |
221 |
Q |
| |
|
|||||| |||||||| | |||||||||||||||| |||| |
|
|
| T |
30874057 |
gaaaatacagaggatattgtgtcgaaatttcagtggatat |
30874018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 27560801 - 27560738
Alignment:
| Q |
168 |
tcttggaaagtattcaaaatatagaggatactttgtcgaaatttcagtgtatatcattctaagt |
231 |
Q |
| |
|
||||||||| ||||||||||| ||||||| || |||||||||||||||| |||||||| ||||| |
|
|
| T |
27560801 |
tcttggaaaatattcaaaatacagaggatgctctgtcgaaatttcagtggatatcattttaagt |
27560738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 412643 - 412562
Alignment:
| Q |
158 |
aggattcatatcttggaaagtattcaaaatatagaggatactttgtcgaaatttcagtgtatatcattctaagtgaaagtca |
239 |
Q |
| |
|
|||||| | |||||| ||| ||||||||||| | |||||| |||||||||||||||||| ||| |||| ||||||||||||| |
|
|
| T |
412643 |
aggattaaaatcttgaaaaatattcaaaatacataggatattttgtcgaaatttcagtggataacattttaagtgaaagtca |
412562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 406635 - 406562
Alignment:
| Q |
167 |
atcttggaaagtattcaaaa-tatagaggatactttgtcgaaatttcagtgtatatcattctaagtgaaagtca |
239 |
Q |
| |
|
|||||| ||| ||||||||| || ||| ||| ||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
406635 |
atcttgaaaaatattcaaaaatacagatgatgctttgtcgaaatttcagtggatatcattttaagtgaaagtca |
406562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 423978 - 423937
Alignment:
| Q |
194 |
gatactttgtcgaaatttcagtgtatatcattctaagtgaaa |
235 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
423978 |
gatactttgtcgaaatttcagtggatatcattttaagtgaaa |
423937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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