View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13954_low_13 (Length: 206)
Name: NF13954_low_13
Description: NF13954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13954_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 505388 - 505218
Alignment:
| Q |
21 |
accatgattgagagttgcaaagagccctctgtataccgcaaattcagctttaaagaatatagacaacaagttcgtgatgatgttcagaagttaggttcca |
120 |
Q |
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| T |
505388 |
accatgattgagagttgcaaagagccctctatataccgcaaattcagctttaaagaatatagacaacaagttcgtgatgatgttcagaagttaggttcca |
505289 |
T |
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| Q |
121 |
aaataggcctacctaggtttatcataaattaggatccgactcttctacattcagagattccccacattcat |
191 |
Q |
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| T |
505288 |
aaataggcctacctaggtttatcataaattaggatccgactcctctatattcagagattccccacattcat |
505218 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 16702162 - 16702099
Alignment:
| Q |
73 |
aagaatatagacaacaagttcgtgatgatgttcagaagttaggttccaaaataggcctacctag |
136 |
Q |
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| T |
16702162 |
aagaatatcggcaacaagttcgagatgatgttcagaagttggggaccaaaataggcctacctag |
16702099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 17676398 - 17676335
Alignment:
| Q |
73 |
aagaatatagacaacaagttcgtgatgatgttcagaagttaggttccaaaataggcctacctag |
136 |
Q |
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|||||||| | ||||||||||| ||||||||||||||||| || ||||||||||||||||||| |
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| T |
17676398 |
aagaatatcggcaacaagttcgagatgatgttcagaagttggggaccaaaataggcctacctag |
17676335 |
T |
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