View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13955_high_10 (Length: 555)

Name: NF13955_high_10
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13955_high_10
NF13955_high_10
[»] chr7 (4 HSPs)
chr7 (3-540)||(45461046-45461586)
chr7 (24-540)||(4165662-4166180)
chr7 (24-200)||(34208086-34208264)
chr7 (33-67)||(40680627-40680661)
[»] chr6 (5 HSPs)
chr6 (247-540)||(5864856-5865149)
chr6 (24-480)||(16469119-16469577)
chr6 (24-227)||(1306846-1307051)
chr6 (483-540)||(16520836-16520893)
chr6 (421-527)||(17711475-17711581)
[»] chr2 (3 HSPs)
chr2 (24-512)||(3151713-3152203)
chr2 (19-70)||(20638052-20638103)
chr2 (421-498)||(20638459-20638536)
[»] chr4 (5 HSPs)
chr4 (19-533)||(19307460-19307976)
chr4 (19-70)||(17998525-17998576)
chr4 (22-67)||(20508312-20508357)
chr4 (33-67)||(40433132-40433166)
chr4 (421-498)||(17998932-17999009)
[»] chr1 (3 HSPs)
chr1 (424-527)||(32644029-32644132)
chr1 (424-527)||(36190678-36190781)
chr1 (421-473)||(48436118-48436170)
[»] chr3 (1 HSPs)
chr3 (421-477)||(14606342-14606398)
[»] chr5 (3 HSPs)
chr5 (22-67)||(12833655-12833700)
chr5 (22-67)||(12865633-12865678)
chr5 (424-464)||(38359625-38359665)


Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 3 - 540
Target Start/End: Original strand, 45461046 - 45461586
Alignment:
Q  3 atcattcagctgatgcgg-ttgtcaatcttgggaataagagcaatgaaagtgctatttattcctttcgag--acgaccattgcgatgaaattccaacaca 99  Q
    |||||||||  ||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||    
T  45461046 atcattcagtcgatgcgggttgtcaatcttaggaataagatcaatgaaagtgctatttattcctttcgagggacgaccgttgcgatgaaattccaacaca 45461145  T
Q  100 aaccgcataatgtcacctttcaattccggccaaaagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcccaca 199  Q
    ||||||||||||||||||||||| |||| |||||| |||||| ||||| |||| |||||| ||||| |||||||| ||||||||||||| ||||||||||    
T  45461146 aaccgcataatgtcacctttcaactccgaccaaaaatctttaataaaatccatcggaatgccatccggacccggattcttatacccatcacaatcccaca 45461245  T
Q  200 ctgccaccttaacttcagtctcattaaaatgataaatcaaactatttcctttcaaaacagataatctcccaaaattcatatcatccaccctaggcctatt 299  Q
    ||||  ||||||||||| ||||||| ||| ||||||||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||||| |||||||    
T  45461246 ctgcagccttaacttcaatctcattgaaaggataaatcaaagtatttccttccaaaacagatagtctccgaaaattcatatcatccaccctatgcctatt 45461345  T
Q  300 aatgtcatgcgcctggtaaagattttgaaaatgactgaaaactgcttccctgacttcagaaactccctccacaacatttccttcaactaaagtaaaagag 399  Q
    ||| ||||||||||||||| ||||||||||||  || ||||||||| |  |||||||||| |||||||||||||||||||||||||||||| || ||||     
T  45461346 aatttcatgcgcctggtaatgattttgaaaatagcttaaaactgctgctatgacttcagatactccctccacaacatttccttcaactaaaatagaagaa 45461445  T
Q  400 agggcattttttcgacgttttcctgacataatagcatgaaaatatttagaatttgcatctccttcctgaagccataatgtttgcgattgttgccacgaaa 499  Q
    |||| |||| |||||||| |  ||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||| |||| |||||||||||||    
T  45461446 agggtatttcttcgacgtatgtctgacatgatagcatgaaaatatttagaatttgcatctccttctcgaagccataatgttcgcgaatgttgccacgaaa 45461545  T
Q  500 tactagcatttgccctggataaagaatgtaaatcagctgac 540  Q
    |||||||||| |||||||||||||||| ||||||| |||||    
T  45461546 tactagcattggccctggataaagaatataaatcatctgac 45461586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 24 - 540
Target Start/End: Complemental strand, 4166180 - 4165662
Alignment:
Q  24 tcaatcttgggaataagagcaatgaaagtgctatttattcctttcgaga--cgaccattgcgatgaaattccaacacaaaccgcataatgtcacctttca 121  Q
    |||||||| ||||||||||| || || ||||||||||||||||| ||||  ||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  4166180 tcaatctttggaataagagcgataaaggtgctatttattccttttgagaggcgaccgttgcgatgaaattccagcacaaaccgcataatgtcacctttca 4166081  T
Q  122 attccggccaaaagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcccacactgccaccttaacttcagtctc 221  Q
    | ||| ||||||| || ||| |||| ||||  |||||| ||||| ||||||||||||| || ||||| ||||||||||| ||  ||||||||||||||||    
T  4166080 aatccagccaaaattccttaataaatcccaaaggaatgccatccggacccggactcttgtaaccatcacaatcccacaccgcagccttaacttcagtctc 4165981  T
Q  222 attaaaatgataaatcaaactatttcctttcaaaacagataatctcccaaaattcatatcatccaccctaggcctattaatgtcatgcgcctggtaaaga 321  Q
    | ||||  | ||||| |    |||| ||| |  ||||||||||||   ||||  || ||||||||||||||||||||| ||| |||||||||| ||| |     
T  4165980 agtaaacgggtaaataagggaattttcttccgcaacagataatcttttaaaaagcaaatcatccaccctaggcctattcatgacatgcgcctgataatgg 4165881  T
Q  322 ttttgaaaatgactgaaaactgcttccctgacttcagaaactccctccacaacatttccttcaactaaagtaaaagagagggcattttttcgacgttttc 421  Q
    | ||| || ||||||||||||||| |||  ||||| ||||||||||||||||||||||| ||||||||| || | |||| ||  ||| ||| |||| | |    
T  4165880 tgttggaagtgactgaaaactgctgcccgaacttcggaaactccctccacaacatttccatcaactaaaatagatgagatggtgtttcttctacgtctgc 4165781  T
Q  422 ctgacataatagcatgaaaatatttagaatttgcatctccttcctgaagccataatgtttgcgattgttgccacgaaatactagcatttgccctggataa 521  Q
    | |||||||| ||||||||||||||||| ||||||||||||||| |||| |||| |  |  |||||||||||| |||||||| || ||||||||||||||    
T  4165780 cggacataatggcatgaaaatatttagagtttgcatctccttcccgaagacatagtaatctcgattgttgccatgaaatacttgcgtttgccctggataa 4165681  T
Q  522 agaatgtaaatcagctgac 540  Q
    ||| |||||||||| ||||    
T  4165680 agagtgtaaatcagttgac 4165662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 24 - 200
Target Start/End: Original strand, 34208086 - 34208264
Alignment:
Q  24 tcaatcttgggaataagagcaatgaaagtgctatttattcctttcgaga--cgaccattgcgatgaaattccaacacaaaccgcataatgtcacctttca 121  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||| ||||  ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34208086 tcaatctttggaataagagcgatgaaggtgctatttattccttttgagaggcgaccgttgcgatgaaattccaacacaaaccgcataatgtcacctttca 34208185  T
Q  122 attccggccaaaagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcccacac 200  Q
    | ||| ||||||| || ||| |||| ||||  |||||| ||||| ||||||||||||| || ||||| |||||||||||    
T  34208186 aatccagccaaaattccttaataaatcccaaaggaatgccatccggacccggactcttgtaaccatcacaatcccacac 34208264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 40680661 - 40680627
Alignment:
Q  33 ggaataagagcaatgaaagtgctatttattccttt 67  Q
    |||||||||||||||||||||||||| ||||||||    
T  40680661 ggaataagagcaatgaaagtgctattgattccttt 40680627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 178; Significance: 9e-96; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 247 - 540
Target Start/End: Complemental strand, 5865149 - 5864856
Alignment:
Q  247 cctttcaaaacagataatctcccaaaattcatatcatccaccctaggcctattaatgtcatgcgcctggtaaagattttgaaaatgactgaaaactgctt 346  Q
    |||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||| |||||||||||||     
T  5865149 ccttccaaaacagatagtctccgaaaattcatatcatccaccctaggcctattaatttcatgcgcctgataatgattttgaaaataactgaaaactgctg 5865050  T
Q  347 ccctgacttcagaaactccctccacaacatttccttcaactaaagtaaaagagagggcattttttcgacgttttcctgacataatagcatgaaaatattt 446  Q
      || |||||||| ||||||||||||| |||||||||||||||| || | || ||| ||||| |||||||| | |||||||| |||||||||||||||||    
T  5865049 atctaacttcagatactccctccacaaaatttccttcaactaaaatagatgaaaggccatttcttcgacgtctgcctgacatgatagcatgaaaatattt 5864950  T
Q  447 agaatttgcatctccttcctgaagccataatgtttgcgattgttgccacgaaatactagcatttgccctggataaagaatgtaaatcagctgac 540  Q
    |||||||| |||||||||| |||||||||||||| |||||||||||||| ||||||||||||| ||| |||||||||||||||||||| |||||    
T  5864949 agaatttggatctccttcccgaagccataatgttcgcgattgttgccacaaaatactagcattggccttggataaagaatgtaaatcatctgac 5864856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 24 - 480
Target Start/End: Original strand, 16469119 - 16469577
Alignment:
Q  24 tcaatcttgggaataagagcaatgaaagtgctatttattcctttcga--gacgaccattgcgatgaaattccaacacaaaccgcataatgtcacctttca 121  Q
    |||||||| ||||||||||  |||||  |||||||||||||||| ||  ||||||| |||||||||||||||||||||| | ||||||||| |||||||     
T  16469119 tcaatcttaggaataagagtgatgaagatgctatttattccttttgatagacgaccgttgcgatgaaattccaacacaatctgcataatgtgacctttcc 16469218  T
Q  122 attccggccaaaagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcccacactgccaccttaacttcagtctc 221  Q
    | ||||||||||| || ||| |||| ||||  |||||| || || |||| |||||||| || ||||  |||||||||||  |  ||||||||||||||||    
T  16469219 aatccggccaaaattccttaataaatcccaaaggaatgccacccggacctggactcttgtaaccattacaatcccacaccacagccttaacttcagtctc 16469318  T
Q  222 attaaaatgataaatcaaactatttcctttcaaaacagataatctcccaaaattcatatcatccaccctaggcctattaatgtcatgcgcctggtaaaga 321  Q
      ||||  |  |||| |    |||||||| || || |||||||||   ||||| |||||||||||||||||||||||| ||| |||||||||| ||| |     
T  16469319 ggtaaatgggcaaatgagggaatttccttccataatagataatctttgaaaatacatatcatccaccctaggcctattcatgacatgcgcctgataatgg 16469418  T
Q  322 ttttgaaaatgactgaaaactgcttccctgacttcagaaactccctccacaacatttccttcaactaaagtaaaagagagggcattttttcgacgttttc 421  Q
    | ||| || ||||||||||||||| |||  ||||| || ||||||||||| |||||||| ||||||||| || |||||| | | ||| ||| |||| | |    
T  16469419 tgttggaagtgactgaaaactgctgcccgaacttcggatactccctccactacatttccatcaactaaaatagaagagatgtcttttcttctacgtctgc 16469518  T
Q  422 ctgacataatagcatgaaaatatttagaatttgcatctccttcctgaagccataatgtt 480  Q
    | |||||||| |||||||||| |||||| ||| ||||||||||||||||||||||||||    
T  16469519 cggacataatggcatgaaaatgtttagagttttcatctccttcctgaagccataatgtt 16469577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 24 - 227
Target Start/End: Complemental strand, 1307051 - 1306846
Alignment:
Q  24 tcaatcttgggaataagagcaatgaaagtgctatttattcctttcgaga--cgaccattgcgatgaaattccaacacaaaccgcataatgtcacctttca 121  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||| ||||  ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1307051 tcaatctttggaataagagcgatgaaggtgctatttattccttttgagagacgaccgttgcgatgaaattccaacacaaaccgcataatgtcacctttca 1306952  T
Q  122 attccggccaaaagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcccacactgccaccttaacttcagtctc 221  Q
    | ||||||||||| || ||| |||| ||||  |||||| ||||| ||||||||||||| || ||||| ||||||||||| ||  ||||||||||||||||    
T  1306951 aatccggccaaaattccttaataaatcccaaaggaatgccatccggacccggactcttgtaaccatcacaatcccacaccgcagccttaacttcagtctc 1306852  T
Q  222 attaaa 227  Q
    | ||||    
T  1306851 agtaaa 1306846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 483 - 540
Target Start/End: Original strand, 16520836 - 16520893
Alignment:
Q  483 cgattgttgccacgaaatactagcatttgccctggataaagaatgtaaatcagctgac 540  Q
    ||||||||||||||||||||| || |||||| |||||||||| |||||||||| ||||    
T  16520836 cgattgttgccacgaaatacttgcgtttgccttggataaagagtgtaaatcagttgac 16520893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 527
Target Start/End: Complemental strand, 17711581 - 17711475
Alignment:
Q  421 cctgacataatagcatgaaaatatttagaatttgcatctccttcctgaagccataatgtttgcgattgttgccacgaaatactagcatttgccctggata 520  Q
    ||||||||||| |||||||||||||| | ||| ||||| |||||  |||||||||||    | |||| |||||| ||||| ||||  || ||||| ||||    
T  17711581 cctgacataatcgcatgaaaatattttgtattggcatccccttctcgaagccataataaacgagattattgccaagaaatgctagtgttagccctcgata 17711482  T
Q  521 aagaatg 527  Q
    |||||||    
T  17711481 aagaatg 17711475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 24 - 512
Target Start/End: Complemental strand, 3152203 - 3151713
Alignment:
Q  24 tcaatcttgggaataagagcaatgaaagtgctatttattcctttcgagacg--accattgcgatgaaattccaacacaaaccgcataatgtcacctttca 121  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||| |||| |  | | ||||||||||||| || ||||||||||||||||||||||||||    
T  3152203 tcaatctttggaataagagcgatgaaggtgctatttattccttttgagaggtgaacgttgcgatgaaatttcagcacaaaccgcataatgtcacctttca 3152104  T
Q  122 attccggccaaaagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcccacactgccaccttaacttcagtctc 221  Q
    | ||||||||||| || ||| |||| ||||  |||||| ||||| ||||||||||||| || ||||| |||| |||||| ||  ||||||||||||||||    
T  3152103 aatccggccaaaattccttaataaatcccaaaggaatgccatccggacccggactcttgtaaccatcacaattccacaccgcagccttaacttcagtctc 3152004  T
Q  222 attaaaatgataaatcaaactatttcctttcaaaacagataatctcccaaaattcatatcatccaccctaggcctattaatgtcatgcgcctggtaaaga 321  Q
    | ||||  |  |||| |    |||| ||| |  ||||||||||||   |||||  | ||||||||||||||||||||| ||| |||||||||| ||| |     
T  3152003 agtaaacaggcaaataagggaattttcttccgcaacagataatcttttaaaatgtaaatcatccaccctaggcctattcatgacatgcgcctgataatgg 3151904  T
Q  322 ttttgaaaatgactgaaaactgcttccctgacttcagaaactccctccacaacatttccttcaactaaagtaaaagagagggcattttttcgacgttttc 421  Q
    | ||| || ||||||||||||||| |||  ||||| ||||||||||||||| ||||||| ||||||||| || | |||| ||  ||| ||| |||| | |    
T  3151903 tgttggaagtgactgaaaactgctgcccgaacttcggaaactccctccacatcatttccatcaactaaaatagatgagatggtgtttcttctacgtctgc 3151804  T
Q  422 ctgacataatagcatgaaaatatttagaatttgcatctccttcctgaagccataatgtttgcgattgttgccacgaaatactagcatttgc 512  Q
    | |||||||| ||||||||||||||||| ||||||||||||||| ||||||||| |  |  |||||||||||| |||||||| || |||||    
T  3151803 cggacataatggcatgaaaatatttagagtttgcatctccttcccgaagccatagtaatctcgattgttgccatgaaatacttgcgtttgc 3151713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 20638052 - 20638103
Alignment:
Q  19 ggttgtcaatcttgggaataagagcaatgaaagtgctatttattcctttcga 70  Q
    ||||||||||||| |||||||| ||| ||||||||||||||||| |||||||    
T  20638052 ggttgtcaatcttaggaataagggcattgaaagtgctatttatttctttcga 20638103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 20638459 - 20638536
Alignment:
Q  421 cctgacataatagcatgaaaatatttagaatttgcatctccttcctgaagccataatgtttgcgattgttgccacgaa 498  Q
    |||||||| ||||||||||||||||| || || |  ||||| ||| |||||||||||  |  ||||||||||||||||    
T  20638459 cctgacatgatagcatgaaaatatttggagttggtgtctccctcccgaagccataatagtctcgattgttgccacgaa 20638536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 143; Significance: 7e-75; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 19 - 533
Target Start/End: Complemental strand, 19307976 - 19307460
Alignment:
Q  19 ggttgtcaatcttgggaataagagcaatgaaagtgctatttattcctttcgaga--cgaccattgcgatgaaattccaacacaaaccgcataatgtcacc 116  Q
    ||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||  ||||| |||||||||||||||||||||||||||||||| |||||    
T  19307976 ggttgtcaatctttggaatgagagcaatgaaagtactatttattcctttagagaaacgaccgttgcgatgaaattccaacacaaaccgcataatatcacc 19307877  T
Q  117 tttcaattccggccaaaagtctttagtaaaacccattggaatgtcatccagacccggactcttatacccatcgcaatcccacactgccaccttaacttca 216  Q
    |||||| ||| |||| ||||||||| |||||||||  ||||   | ||  ||||||| ||||| || ||||| |||||||||||||| |||||||||||     
T  19307876 tttcaaatcctgccagaagtctttaataaaacccaaaggaacaccgtctggacccgggctcttgtaaccatcacaatcccacactgctaccttaacttcc 19307777  T
Q  217 gtctcattaaaatgataaatcaaactatttcctttcaaaacagataatctcccaaaattcatatcatccaccctaggcctatt-aatgtcatgcgcctgg 315  Q
    | |||  ||||  ||   |||| |  ||| |||| ||| || |||||    | |||||||||| ||||||||||||||||||| |  | ||  | ||||     
T  19307776 gcctctgtaaacggacgtatcagagcattaccttccaacacggataaatgacgaaaattcataccatccaccctaggcctattcagaggca-acacctga 19307678  T
Q  316 taaagattttgaaaatgactgaaaactgcttccctgacttcagaaactccctccacaacatttccttcaactaaagtaaaagagagggcattttttcgac 415  Q
    ||| |||  || |||||| | | ||||||| |||||||||| || || |||||||||| || ||||||||||||| || | |||| || ||||  |||||    
T  19307677 taatgatgctggaaatgattaagaactgctgccctgacttcggatacaccctccacaatatgtccttcaactaaaatagaggagatggtatttcgtcgac 19307578  T
Q  416 gttttcctgacataatagcatgaaaatatttagaatttgcatctccttcctgaagccataatgtttgcgattgttgccacgaaatactagcatttgccct 515  Q
    || |  | |||||||| |||||||||||||||||||| || ||||||||  ||||||||| |  | |||||||||||||||| |||||||||||| ||||    
T  19307577 gtctatcagacataattgcatgaaaatatttagaattcgcgtctccttctcgaagccatagtaatcgcgattgttgccacgagatactagcatttaccct 19307478  T
Q  516 ggataaagaatgtaaatc 533  Q
    ||| ||||||||||||||    
T  19307477 ggacaaagaatgtaaatc 19307460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 17998525 - 17998576
Alignment:
Q  19 ggttgtcaatcttgggaataagagcaatgaaagtgctatttattcctttcga 70  Q
    ||||||||||||| |||||||| ||| ||||||||||||||||| |||||||    
T  17998525 ggttgtcaatcttaggaataagggcattgaaagtgctatttatttctttcga 17998576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 20508357 - 20508312
Alignment:
Q  22 tgtcaatcttgggaataagagcaatgaaagtgctatttattccttt 67  Q
    |||||||||| ||||||||||||||||| ||||||||||| |||||    
T  20508357 tgtcaatcttaggaataagagcaatgaacgtgctatttatcccttt 20508312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 40433166 - 40433132
Alignment:
Q  33 ggaataagagcaatgaaagtgctatttattccttt 67  Q
    |||||||||||||||||||| ||||||||||||||    
T  40433166 ggaataagagcaatgaaagtactatttattccttt 40433132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 17998932 - 17999009
Alignment:
Q  421 cctgacataatagcatgaaaatatttagaatttgcatctccttcctgaagccataatgtttgcgattgttgccacgaa 498  Q
    |||||||| ||||||||||||||||| || || |  ||||| ||| |||||||||||  |  ||||||||||||||||    
T  17998932 cctgacatgatagcatgaaaatatttggagttggtgtctccctcccgaagccataatagtctcgattgttgccacgaa 17999009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 424 - 527
Target Start/End: Original strand, 32644029 - 32644132
Alignment:
Q  424 gacataatagcatgaaaatatttagaatttgcatctccttcctgaagccataatgtttgcgattgttgccacgaaatactagcatttgccctggataaag 523  Q
    |||||||| |||||||||||||| ||||| ||||| |||||  ||||||||||||   | ||||||||||| ||||| || ||||| ||||| || ||||    
T  32644029 gacataatcgcatgaaaatattttgaattggcatccccttcacgaagccataatgaccgagattgttgccaagaaatgctcgcattagccctcgaaaaag 32644128  T
Q  524 aatg 527  Q
    ||||    
T  32644129 aatg 32644132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 424 - 527
Target Start/End: Complemental strand, 36190781 - 36190678
Alignment:
Q  424 gacataatagcatgaaaatatttagaatttgcatctccttcctgaagccataatgtttgcgattgttgccacgaaatactagcatttgccctggataaag 523  Q
    |||||||| |||||||||||||| | ||| ||||| |||||  |||||||||||    | ||||||||||| ||||| ||||| || ||||| |||||||    
T  36190781 gacataatcgcatgaaaatattttgtattggcatccccttctcgaagccataataaacgagattgttgccaagaaatgctagcgttagccctcgataaag 36190682  T
Q  524 aatg 527  Q
    ||||    
T  36190681 aatg 36190678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 473
Target Start/End: Original strand, 48436118 - 48436170
Alignment:
Q  421 cctgacataatagcatgaaaatatttagaatttgcatctccttcctgaagcca 473  Q
    |||||||||||||||||| ||||||| | ||||||||| |||||| |||||||    
T  48436118 cctgacataatagcatgataatatttgggatttgcatccccttcccgaagcca 48436170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 477
Target Start/End: Complemental strand, 14606398 - 14606342
Alignment:
Q  421 cctgacataatagcatgaaaatatttagaatttgcatctccttcctgaagccataat 477  Q
    |||||||| ||||||||||| ||||||||||||||||| | |||  |||||||||||    
T  14606398 cctgacatgatagcatgaaagtatttagaatttgcatcccattcgcgaagccataat 14606342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 12833655 - 12833700
Alignment:
Q  22 tgtcaatcttgggaataagagcaatgaaagtgctatttattccttt 67  Q
    |||||| ||| ||||||||||||||||| ||||||||||| |||||    
T  12833655 tgtcaaccttaggaataagagcaatgaacgtgctatttatcccttt 12833700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 12865633 - 12865678
Alignment:
Q  22 tgtcaatcttgggaataagagcaatgaaagtgctatttattccttt 67  Q
    |||||| ||| ||||||||||||||||| ||||||||||| |||||    
T  12865633 tgtcaaccttaggaataagagcaatgaacgtgctatttatcccttt 12865678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 464
Target Start/End: Original strand, 38359625 - 38359665
Alignment:
Q  424 gacataatagcatgaaaatatttagaatttgcatctccttc 464  Q
    |||| ||||| |||||||||||||||||||||||| |||||    
T  38359625 gacaaaatagaatgaaaatatttagaatttgcatcgccttc 38359665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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