View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_high_11 (Length: 542)
Name: NF13955_high_11
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 5 - 525
Target Start/End: Complemental strand, 21652680 - 21652159
Alignment:
| Q |
5 |
taaattattctacaagcatatgttttgtaagctcatcatgcaattaaaaaatttgaatcgttacgagtgctttgaaaatcatagcatacctgaatcatat |
104 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21652680 |
taaatcattctacaagcatatgttttgtaagctcatcatgcaattaaaaaatttgaatcgttacgggtgctttgaaaatcatagcatacctgaatcatat |
21652581 |
T |
|
| Q |
105 |
gccagacgcaacgccaagcttctcgagaaaagactggggccataatttctacaaatctnnnnnnnnn---ggaacgattatcatgatagcctaaagaaaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||| |
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| T |
21652580 |
gccagacgcaacgccaagcttctcgagaaaagactggggccataatttctacaaatctaaaaaaaaaaaaggaactattatcatgatagcctaatgaaaa |
21652481 |
T |
|
| Q |
202 |
taaagcctatcgaaaaagttaagttacatttaaaatttgcatcaaggaagaagaaagaccatacgcggcacaaggaggcaaatctggactaccacaccag |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21652480 |
taaagcctatcgaaaaagttaagttacatttaaaatttgcatcaaggaagaagaaagaccatacgcggcacaaggaggcaaatctggactaccacaccag |
21652381 |
T |
|
| Q |
302 |
ccaggttcctcatctgtaattcttttcaccaagaaacataaaaatgattaatatagcacattttgaaagtatggcaaagggaatctcaatagagtaatga |
401 |
Q |
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| T |
21652380 |
cccggtttctcatctgtaactcttttcaccaagaaacataaaaatgattaata--gcacattttgaaagtatggcaaagggaatctcaatagagtaatga |
21652283 |
T |
|
| Q |
402 |
ttgaaaatagagaggaaaggaaggttaaagacatacttgtgaacttcggtatcatccctcttctttgtcatctcccaggtgaatccactattggctccga |
501 |
Q |
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| T |
21652282 |
ttgaaattagagaggaaaggaaggttaaagacatacttgtgaacttcggtatcatccctcttctttgtcatctcccaggtgaatccactattggctccga |
21652183 |
T |
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| Q |
502 |
gtcccggttgtgaaatctccaaac |
525 |
Q |
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| T |
21652182 |
gtcccggttgtgaaatctccaaac |
21652159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 40419263 - 40419335
Alignment:
| Q |
90 |
atacctgaatcatatgccagacgcaacgccaagcttctcgagaaaagactggggccataatttctacaaatct |
162 |
Q |
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||||||||| ||||||||| || |||||||| ||||| |||||||| | |||||||||||||| |||||||| |
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| T |
40419263 |
atacctgaagcatatgccacacacaacgccatgcttcccgagaaaaagcaggggccataatttccacaaatct |
40419335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 37456778 - 37456711
Alignment:
| Q |
92 |
acctgaatcatatgccagacgcaacgccaagcttctcgagaaaagactggggccataatttctacaaa |
159 |
Q |
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| T |
37456778 |
acctgaatcatatgccacacgcagcgccatgcttcacgtgaaaacactggagccataatctcaacaaa |
37456711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 39263194 - 39263127
Alignment:
| Q |
92 |
acctgaatcatatgccagacgcaacgccaagcttctcgagaaaagactggggccataatttctacaaa |
159 |
Q |
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||||||||||||||||| || |||||||| |||||||| || || ||||| |||||||| || ||||| |
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| T |
39263194 |
acctgaatcatatgccacacacaacgccatgcttctcgcgagaatactggagccataatctcaacaaa |
39263127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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