View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13955_high_14 (Length: 512)

Name: NF13955_high_14
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13955_high_14
NF13955_high_14
[»] chr1 (10 HSPs)
chr1 (278-490)||(8659407-8659619)
chr1 (13-161)||(8659142-8659290)
chr1 (210-249)||(8659339-8659378)
chr1 (70-153)||(42560948-42561031)
chr1 (110-156)||(26542699-26542745)
chr1 (110-147)||(51229286-51229323)
chr1 (110-156)||(21966271-21966317)
chr1 (71-152)||(6012971-6013051)
chr1 (121-153)||(2653382-2653414)
chr1 (111-155)||(52675342-52675386)
[»] chr2 (14 HSPs)
chr2 (70-155)||(23914570-23914655)
chr2 (70-153)||(744899-744982)
chr2 (69-156)||(44821331-44821418)
chr2 (111-155)||(10643632-10643676)
chr2 (69-153)||(35468717-35468801)
chr2 (114-156)||(960606-960649)
chr2 (110-149)||(16573873-16573912)
chr2 (109-156)||(45555147-45555194)
chr2 (91-149)||(11694210-11694268)
chr2 (73-155)||(33201233-33201315)
chr2 (70-155)||(9740596-9740681)
chr2 (70-155)||(23914769-23914854)
chr2 (123-156)||(25527402-25527435)
chr2 (121-149)||(11681636-11681664)
[»] chr8 (12 HSPs)
chr8 (76-152)||(3501385-3501461)
chr8 (72-149)||(1284151-1284228)
chr8 (58-155)||(11420410-11420507)
chr8 (110-152)||(34882319-34882361)
chr8 (115-155)||(2442283-2442323)
chr8 (115-155)||(24314139-24314179)
chr8 (121-153)||(34103478-34103510)
chr8 (78-149)||(4438535-4438606)
chr8 (70-153)||(29005534-29005617)
chr8 (124-155)||(45521540-45521571)
chr8 (70-144)||(16337997-16338071)
chr8 (96-156)||(34151132-34151191)
[»] chr6 (10 HSPs)
chr6 (70-149)||(32279611-32279690)
chr6 (76-143)||(28133479-28133546)
chr6 (110-155)||(8866858-8866903)
chr6 (70-149)||(10129696-10129776)
chr6 (121-155)||(1562647-1562681)
chr6 (122-156)||(14237564-14237598)
chr6 (77-143)||(28116580-28116646)
chr6 (76-141)||(28220350-28220415)
chr6 (116-156)||(6877109-6877149)
chr6 (76-143)||(28219460-28219525)
[»] chr5 (16 HSPs)
chr5 (69-155)||(39850393-39850479)
chr5 (69-148)||(18282264-18282343)
chr5 (70-153)||(29686217-29686300)
chr5 (91-155)||(23085331-23085395)
chr5 (70-141)||(14000849-14000920)
chr5 (91-149)||(14001117-14001175)
chr5 (126-156)||(29663451-29663481)
chr5 (121-155)||(31378207-31378241)
chr5 (106-156)||(35695289-35695339)
chr5 (70-152)||(37516882-37516964)
chr5 (126-155)||(33322267-33322296)
chr5 (114-155)||(35373318-35373359)
chr5 (93-153)||(833878-833938)
chr5 (121-149)||(2334314-2334342)
chr5 (121-153)||(17822386-17822418)
chr5 (91-147)||(29632694-29632750)
[»] scaffold0455 (1 HSPs)
scaffold0455 (76-143)||(11515-11582)
[»] chr7 (13 HSPs)
chr7 (70-149)||(3434015-3434093)
chr7 (89-152)||(38237477-38237540)
chr7 (110-155)||(24650006-24650051)
chr7 (69-142)||(43358742-43358815)
chr7 (91-155)||(7606263-7606327)
chr7 (95-146)||(28069670-28069721)
chr7 (70-149)||(35338347-35338426)
chr7 (121-156)||(36471598-36471633)
chr7 (110-156)||(10039945-10039991)
chr7 (121-155)||(15753630-15753664)
chr7 (71-149)||(32358849-32358927)
chr7 (124-156)||(35791991-35792023)
chr7 (69-153)||(47437795-47437879)
[»] chr4 (11 HSPs)
chr4 (110-156)||(4608669-4608715)
chr4 (69-156)||(3092369-3092456)
chr4 (121-156)||(47723083-47723118)
chr4 (70-156)||(4505794-4505879)
chr4 (110-152)||(4523880-4523922)
chr4 (89-155)||(48458446-48458512)
chr4 (69-146)||(46058392-46058469)
chr4 (89-149)||(20004775-20004835)
chr4 (112-156)||(44689815-44689859)
chr4 (121-153)||(45637838-45637870)
chr4 (69-153)||(48458033-48458117)
[»] chr3 (11 HSPs)
chr3 (92-142)||(28247325-28247375)
chr3 (115-153)||(50585778-50585816)
chr3 (71-142)||(1338122-1338193)
chr3 (70-149)||(2594472-2594551)
chr3 (102-152)||(47409964-47410014)
chr3 (115-156)||(28170641-28170682)
chr3 (91-148)||(36643583-36643640)
chr3 (115-156)||(42618143-42618184)
chr3 (115-156)||(47968346-47968387)
chr3 (123-156)||(51940251-51940284)
chr3 (107-155)||(27371280-27371328)
[»] scaffold0047 (1 HSPs)
scaffold0047 (84-149)||(65530-65595)
[»] scaffold0038 (2 HSPs)
scaffold0038 (76-141)||(20848-20913)
scaffold0038 (76-143)||(19958-20023)
[»] scaffold0009 (1 HSPs)
scaffold0009 (69-144)||(53693-53765)
[»] scaffold0043 (1 HSPs)
scaffold0043 (107-155)||(72141-72189)
[»] scaffold0018 (1 HSPs)
scaffold0018 (123-155)||(36511-36543)


Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 278 - 490
Target Start/End: Original strand, 8659407 - 8659619
Alignment:
Q  278 cagttgtctaaactctagtatttaaaatcaagaacctaaaatgatgatacaaaacgaacataataaataacattgctctcctcagaagtttaatcatcat 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8659407 cagttgtctaaactctagtatttaaaatcaagaacctaaaatgatgatacaaaacgaacataataaataacattgctctcctcagaagtttaatcatcat 8659506  T
Q  378 ctacnnnnnnntaatatctaaattagtctcacattctgaagattaattgttctcaaatctcaagagtaatttgatatatttttctatgacaattttgata 477  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8659507 ctacaaaaaaataatatctaaattagtctcacattctgaagattaattgttctcaaatctcaagagtaatttgatatatttttctatgacaattttgata 8659606  T
Q  478 taattttttgtta 490  Q
    |||||||||||||    
T  8659607 taattttttgtta 8659619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 8659142 - 8659290
Alignment:
Q  13 aatatgtaaagattatagagattttagactgtcttttttattctctcaattttgcatttaaacaaatttgtctatgaaaatgttatttagttagtgccat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8659142 aatatgtaaagattatagagattttagactgtcttttttattctctcaattttgcatttaaacaaatttgtctatgaaaatgttatttagttagtgccat 8659241  T
Q  113 tgaaaatgataaaaatttatattatatttgttatattgttggtgaattg 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8659242 tgaaaatgataaaaatttatattatatttgttatattgttggtgaattg 8659290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 8659339 - 8659378
Alignment:
Q  210 ttgatcataatctatatggtagattatggattagtgcaac 249  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8659339 ttgatcataatctatatggtagattatggattagtgcaac 8659378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 70 - 153
Target Start/End: Complemental strand, 42561031 - 42560948
Alignment:
Q  70 ttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatattgttg 153  Q
    |||||||||||| ||||| | |||||||| | ||| ||| |||||||||||| || | |||||||||||||||  |||||||||    
T  42561031 ttaaacaaatttttctataataatgttatattgttggtgtcattgaaaatgacaagagtttatattatatttgcaatattgttg 42560948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 26542699 - 26542745
Alignment:
Q  110 cattgaaaatgataaaaatttatattatatttgttatattgttggtg 156  Q
    ||||||||| ||||||| ||||||||||||||||| |||||||||||    
T  26542699 cattgaaaaagataaaattttatattatatttgttttattgttggtg 26542745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 51229323 - 51229286
Alignment:
Q  110 cattgaaaatgataaaaatttatattatatttgttata 147  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  51229323 cattgaaaatgataaaaatttatattatatttgctata 51229286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 21966271 - 21966317
Alignment:
Q  110 cattgaaaatgataaaaatttatattatatttgttatattgttggtg 156  Q
    |||| |||| ||||| |||||||||||||||||||| ||||||||||    
T  21966271 cattcaaaaagataagaatttatattatatttgttacattgttggtg 21966317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 6012971 - 6013051
Alignment:
Q  71 taaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatattgtt 152  Q
    ||||||||||| ||||| | ||| |||| | |||  || ||||||||| ||||||| |||||||||||||||||||| ||||    
T  6012971 taaacaaatttttctataacaatattatgttgttgatgtcattgaaaaagataaaa-tttatattatatttgttataatgtt 6013051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 2653382 - 2653414
Alignment:
Q  121 ataaaaatttatattatatttgttatattgttg 153  Q
    |||| ||||||||||||||||||||||||||||    
T  2653382 ataagaatttatattatatttgttatattgttg 2653414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 52675342 - 52675386
Alignment:
Q  111 attgaaaatgataaaaatttatattatatttgttatattgttggt 155  Q
    |||||||| ||||| ||||| ||| ||||||||||||||||||||    
T  52675342 attgaaaaagataagaatttttatcatatttgttatattgttggt 52675386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 23914570 - 23914655
Alignment:
Q  70 ttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatattgttggt 155  Q
    ||||||||||||| |||| | |||||||| | ||| |||  |||||||| ||||| ||||||||||||||||||||||||||||||    
T  23914570 ttaaacaaatttggctataagaatgttatattgtttgtgttattgaaaaagataagaatttatattatatttgttatattgttggt 23914655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 153
Target Start/End: Complemental strand, 744982 - 744899
Alignment:
Q  70 ttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatattgttg 153  Q
    ||||| |||||||||||| | |||||||| | ||| |||  ||| |||| ||||||||||||||||||||||| ||||||||||    
T  744982 ttaaataaatttgtctataagaatgttatattgttggtgttatttaaaaagataaaaatttatattatatttgctatattgttg 744899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 69 - 156
Target Start/End: Original strand, 44821331 - 44821418
Alignment:
Q  69 tttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatattgttggtg 156  Q
    |||||| ||||||| |||| |||||| ||| | |||||||  | | |||| ||||||||||||| |||||||| ||||||||||||||    
T  44821331 tttaaataaatttgcctataaaaatgctatattgttagtgttaattaaaaagataaaaatttattttatatttattatattgttggtg 44821418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 10643632 - 10643676
Alignment:
Q  111 attgaaaatgataaaaatttatattatatttgttatattgttggt 155  Q
    |||||||| ||||| |||||||||||||||| |||||||||||||    
T  10643632 attgaaaacgataataatttatattatatttattatattgttggt 10643676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 35468717 - 35468801
Alignment:
Q  69 tttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatattgttg 153  Q
    ||||| |||||||| |||| | |||||||||| ||| ||| || | ||||  |||| |||||||||||||||| |||||||||||    
T  35468717 tttaagcaaatttgactataagaatgttattttgttggtgtcaataaaaaatataagaatttatattatatttattatattgttg 35468801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 156
Target Start/End: Complemental strand, 960649 - 960606
Alignment:
Q  114 gaaaatgataaaaatttatatta-tatttgttatattgttggtg 156  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||    
T  960649 gaaaaagataaaaatttatattagtatttgttatattgttggtg 960606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 149
Target Start/End: Original strand, 16573873 - 16573912
Alignment:
Q  110 cattgaaaatgataaaaatttatattatatttgttatatt 149  Q
    |||| |||||||||||||||||||||||||||| ||||||    
T  16573873 cattcaaaatgataaaaatttatattatatttgatatatt 16573912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 156
Target Start/End: Original strand, 45555147 - 45555194
Alignment:
Q  109 ccattgaaaatgataaaaatttatattatatttgttatattgttggtg 156  Q
    ||||||||||  |||||| ||||||||||| |||||||||||||||||    
T  45555147 ccattgaaaaatataaaattttatattataattgttatattgttggtg 45555194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 11694268 - 11694210
Alignment:
Q  91 aatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatatt 149  Q
    |||| ||||| ||| ||| |||| ||||  |||||||||||||||||||||||||||||    
T  11694268 aatgctattttgttggtgtcattcaaaaatataaaaatttatattatatttgttatatt 11694210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 33201233 - 33201315
Alignment:
Q  73 aacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatattgttggt 155  Q
    |||||||||||| || | |||| ||||| |||  || |||| | || ||||| ||||| ||||||||||||||||||||||||    
T  33201233 aacaaatttgtcaataagaatgctattttgttgatgtcattcagaacgataagaatttgtattatatttgttatattgttggt 33201315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 9740681 - 9740596
Alignment:
Q  70 ttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatattgttggt 155  Q
    ||||||||| |||| | | |||||| ||| | |||||||  ||| |||||||||| ||||| |||||||||||||| ||| |||||    
T  9740681 ttaaacaaaattgtttttaaaaatgctatattgttagtgttattaaaaatgataagaatttttattatatttgttacattattggt 9740596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 23914769 - 23914854
Alignment:
Q  70 ttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatattgttggt 155  Q
    ||||||||||||| |||| | |||||||| | ||| ||   ||||||||  |||| |||||||||||| |||||||| ||||||||    
T  23914769 ttaaacaaatttgcctataagaatgttatattgttggtaatattgaaaaatataagaatttatattatgtttgttatcttgttggt 23914854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 25527402 - 25527435
Alignment:
Q  123 aaaaatttatattatatttgttatattgttggtg 156  Q
    ||||||||||||||||||||||||||||| ||||    
T  25527402 aaaaatttatattatatttgttatattgtcggtg 25527435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 149
Target Start/End: Complemental strand, 11681664 - 11681636
Alignment:
Q  121 ataaaaatttatattatatttgttatatt 149  Q
    |||||||||||||||||||||||||||||    
T  11681664 ataaaaatttatattatatttgttatatt 11681636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 3501461 - 3501385
Alignment:
Q  76 aaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatattgtt 152  Q
    ||||||| |||| |||||||||||| ||| ||| |||| |||||||||| || ||||||||||||||||||||||||    
T  3501461 aaatttgactataaaaatgttattttgttggtgtcattcaaaatgataagaacttatattatatttgttatattgtt 3501385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 1284151 - 1284228
Alignment:
Q  72 aaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatatt 149  Q
    ||||||||||  |||| | |||||||||| ||||||| |||| |||| |||| |||||||| ||||||||||||||||    
T  1284151 aaacaaatttcactataagaatgttattttgttagtgtcattcaaaaagatacaaatttatgttatatttgttatatt 1284228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 155
Target Start/End: Complemental strand, 11420507 - 11420410
Alignment:
Q  58 tcaattttgcatttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatattgttggt 155  Q
    |||||| | |||||||| ||||||| |||| | ||| |||||| ||| |||   || |||| ||||| ||||||||||||||||||||||||||||||    
T  11420507 tcaattatacatttaaataaatttgactataagaatattattttgttggtgttgttcaaaaagataagaatttatattatatttgttatattgttggt 11420410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 34882319 - 34882361
Alignment:
Q  110 cattgaaaatgataaaaatttatattatatttgttatattgtt 152  Q
    |||| |||||||||| |||||||||||||||||||||||||||    
T  34882319 cattcaaaatgataataatttatattatatttgttatattgtt 34882361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 2442283 - 2442323
Alignment:
Q  115 aaaatgataaaaatttatattatatttgttatattgttggt 155  Q
    |||| |||||||||||||||||||||||||||||| |||||    
T  2442283 aaaaagataaaaatttatattatatttgttatattattggt 2442323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 24314139 - 24314179
Alignment:
Q  115 aaaatgataaaaatttatattatatttgttatattgttggt 155  Q
    |||||||| ||||||||||| ||||||||||||||||||||    
T  24314139 aaaatgattaaaatttatataatatttgttatattgttggt 24314179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 34103478 - 34103510
Alignment:
Q  121 ataaaaatttatattatatttgttatattgttg 153  Q
    |||||||||||||||||||||||||||||||||    
T  34103478 ataaaaatttatattatatttgttatattgttg 34103510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 4438535 - 4438606
Alignment:
Q  78 atttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatatt 149  Q
    |||||||||| | |||||||| | ||| ||  |||| |||| ||||| ||||||||||||||||||||||||    
T  4438535 atttgtctataagaatgttatattgttggtatcattaaaaaagataagaatttatattatatttgttatatt 4438606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 153
Target Start/End: Original strand, 29005534 - 29005617
Alignment:
Q  70 ttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatattgttg 153  Q
    |||||||||||| ||||| | | |||||| | ||| ||  ||||||||| ||||||| |||||||||||||||  |||||||||    
T  29005534 ttaaacaaatttttctataatattgttatattgttggtatcattgaaaaggataaaagtttatattatatttgcaatattgttg 29005617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 155
Target Start/End: Original strand, 45521540 - 45521571
Alignment:
Q  124 aaaatttatattatatttgttatattgttggt 155  Q
    ||||||||||||||||||||||||||||||||    
T  45521540 aaaatttatattatatttgttatattgttggt 45521571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 16337997 - 16338071
Alignment:
Q  70 ttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgtt 144  Q
    |||||||||||||||||| | |||| ||| | ||| ||| |||| |||| |||||| | ||||||||||||||||    
T  16337997 ttaaacaaatttgtctataagaatgatatattgttggtgtcatttaaaaagataaacaattatattatatttgtt 16338071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 34151132 - 34151191
Alignment:
Q  96 tatttagttagtgccattgaaaatgataaaaatttatattatatttgttatattgttggtg 156  Q
    ||||| ||| ||| |||| |||| ||||| |||||||||||||||| ||||||||||||||    
T  34151132 tattttgttggtgtcatttaaaaagataagaatttatattatattt-ttatattgttggtg 34151191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 32279690 - 32279611
Alignment:
Q  70 ttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatatt 149  Q
    |||| |||||||| | || |||||||||||| ||| ||| |||| |||| ||||| ||||||||||||||||||||||||    
T  32279690 ttaagcaaatttgaccataaaaatgttattttgttggtgtcattaaaaaagataagaatttatattatatttgttatatt 32279611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 28133546 - 28133479
Alignment:
Q  76 aaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgt 143  Q
    ||||||| |||| | ||||||||||||||  || ||||| ||| ||||||||||||||||||||||||    
T  28133546 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 28133479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 8866903 - 8866858
Alignment:
Q  110 cattgaaaatgataaaaatttatattatatttgttatattgttggt 155  Q
    |||| |||| ||||| ||||||||||||||||||||||||||||||    
T  8866903 cattaaaaaagataagaatttatattatatttgttatattgttggt 8866858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 10129776 - 10129696
Alignment:
Q  70 ttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaa-tgataaaaatttatattatatttgttatatt 149  Q
    |||||||||||||| ||| |||| | ||| ||||||||| |||| |||| | |||| ||||||||||||||||| ||||||    
T  10129776 ttaaacaaatttgtgtataaaaaggctatatagttagtgtcattaaaaaattataagaatttatattatatttgatatatt 10129696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 155
Target Start/End: Original strand, 1562647 - 1562681
Alignment:
Q  121 ataaaaatttatattatatttgttatattgttggt 155  Q
    |||||| ||||||||||||||||||||||||||||    
T  1562647 ataaaactttatattatatttgttatattgttggt 1562681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 156
Target Start/End: Complemental strand, 14237598 - 14237564
Alignment:
Q  122 taaaaatttatattatatttgttatattgttggtg 156  Q
    ||||||||||||||||| |||||||||||||||||    
T  14237598 taaaaatttatattataattgttatattgttggtg 14237564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 28116580 - 28116646
Alignment:
Q  77 aatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgt 143  Q
    |||||| |||| | ||||||||||||||  || || || ||| ||||||||||||||||||||||||    
T  28116580 aatttgactataagaatgttatttagtttatgtcactgcaaaagataaaaatttatattatatttgt 28116646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 28220415 - 28220350
Alignment:
Q  76 aaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatattt 141  Q
    ||||||| |||| | ||||||||||||||  || ||||| ||| ||||| ||||||||||||||||    
T  28220415 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataagaatttatattatattt 28220350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 6877109 - 6877149
Alignment:
Q  116 aaatgataaaaatttatattatatttgttatattgttggtg 156  Q
    |||||||||||||||| ||| | ||||||||||||||||||    
T  6877109 aaatgataaaaatttagattttttttgttatattgttggtg 6877149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 28219460 - 28219525
Alignment:
Q  76 aaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgt 143  Q
    ||||||| |||| | |||||||||||||| ||  ||||| ||| ||||| ||||||||||||||||||    
T  28219460 aaatttgactataagaatgttatttagtttgt--cattgcaaaagataagaatttatattatatttgt 28219525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 39850393 - 39850479
Alignment:
Q  69 tttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatattgttggt 155  Q
    ||||||||||||||||||| | |||||||| | ||||  |  ||| |||||||||| |||||||||||||||| ||||||| |||||    
T  39850393 tttaaacaaatttgtctataataatgttatattgttaaagttattaaaaatgataagaatttatattatatttattatattattggt 39850479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 18282343 - 18282264
Alignment:
Q  69 tttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatat 148  Q
    |||||||||||||| |||| | ||| |||||| ||| ||| |||| |||| ||||||||||| |||| ||||||||||||    
T  18282343 tttaaacaaatttgactataagaatattattttgttggtgtcattcaaaaagataaaaatttgtattctatttgttatat 18282264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 70 - 153
Target Start/End: Complemental strand, 29686300 - 29686217
Alignment:
Q  70 ttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatattgttg 153  Q
    ||||||||||||  |||| | ||||||| ||  || ||| |||| |||| ||||| ||||||||||||||||||||||||||||    
T  29686300 ttaaacaaattttactataagaatgttaatttattggtgtcattcaaaaagataagaatttatattatatttgttatattgttg 29686217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 23085395 - 23085331
Alignment:
Q  91 aatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatattgttggt 155  Q
    |||||||||| ||| ||| || | ||||  |||| ||||||||||||||||||||||||||||||    
T  23085395 aatgttattttgttggtgtcagttaaaaaaataagaatttatattatatttgttatattgttggt 23085331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 14000920 - 14000849
Alignment:
Q  70 ttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatattt 141  Q
    ||||||||||||| ||||  |||||  |||| ||| ||| |||| |||| ||||||||||||||||||||||    
T  14000920 ttaaacaaatttgactatagaaatgcaattttgttggtgtcattaaaaaagataaaaatttatattatattt 14000849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 14001175 - 14001117
Alignment:
Q  91 aatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatatt 149  Q
    |||||||||| |||  || |||| |||| ||||| ||||||||||||||||||||||||    
T  14001175 aatgttattttgttgatgtcattcaaaaagataagaatttatattatatttgttatatt 14001117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 156
Target Start/End: Original strand, 29663451 - 29663481
Alignment:
Q  126 aatttatattatatttgttatattgttggtg 156  Q
    |||||||||||||||||||||||||||||||    
T  29663451 aatttatattatatttgttatattgttggtg 29663481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 155
Target Start/End: Original strand, 31378207 - 31378241
Alignment:
Q  121 ataaaaatttatattatatttgttatattgttggt 155  Q
    ||||||||| |||||||||||||||||||||||||    
T  31378207 ataaaaattgatattatatttgttatattgttggt 31378241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 35695289 - 35695339
Alignment:
Q  106 gtgccattgaaaatgataaaaatttatattatatttgttatattgttggtg 156  Q
    |||||||| |||| |||| ||||||||||||||| || |||||||||||||    
T  35695289 gtgccattcaaaaagatataaatttatattatatgtggtatattgttggtg 35695339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 37516964 - 37516882
Alignment:
Q  70 ttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatattgtt 152  Q
    ||||| |||||| ||||| |||| ||| | ||||| ||| |||| ||||  |||| ||||||||||||||||| |||||||||    
T  37516964 ttaaataaatttttctataaaaaggttttatagttggtgtcattcaaaaatataagaatttatattatatttgatatattgtt 37516882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 33322267 - 33322296
Alignment:
Q  126 aatttatattatatttgttatattgttggt 155  Q
    ||||||||||||||||||||||||||||||    
T  33322267 aatttatattatatttgttatattgttggt 33322296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 35373318 - 35373359
Alignment:
Q  114 gaaaatgataaaaatttatattatatttgttatattgttggt 155  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  35373318 gaaaaagataagaatttttattatatttgttatattgttggt 35373359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 153
Target Start/End: Original strand, 833878 - 833938
Alignment:
Q  93 tgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatattgttg 153  Q
    |||||| | ||| ||| |||| |||| ||||| |||||| |||||||||||||||||||||    
T  833878 tgttatattgttggtgtcattcaaaaagataagaatttagattatatttgttatattgttg 833938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 149
Target Start/End: Complemental strand, 2334342 - 2334314
Alignment:
Q  121 ataaaaatttatattatatttgttatatt 149  Q
    |||||||||||||||||||||||||||||    
T  2334342 ataaaaatttatattatatttgttatatt 2334314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 17822386 - 17822418
Alignment:
Q  121 ataaaaatttatattatatttgttatattgttg 153  Q
    |||| ||||||||||||||||||||||||||||    
T  17822386 ataagaatttatattatatttgttatattgttg 17822418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 29632694 - 29632750
Alignment:
Q  91 aatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttata 147  Q
    |||||||||| ||| ||| |||| |||| ||||| |||||||||| |||||||||||    
T  29632694 aatgttattttgttggtgtcatttaaaaagataagaatttatattttatttgttata 29632750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 11582 - 11515
Alignment:
Q  76 aaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgt 143  Q
    ||||||| |||| | ||||||||||||||  || ||||| ||| ||||||||||||||||||||||||    
T  11582 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 11515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 3434015 - 3434093
Alignment:
Q  70 ttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatatt 149  Q
    |||| |||||||| |||| | |||||||||| ||||| | |||| ||| |||||| ||||||||||||||||||||||||    
T  3434015 ttaagcaaatttgactataagaatgttattttgttagggtcattcaaa-tgataagaatttatattatatttgttatatt 3434093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 38237540 - 38237477
Alignment:
Q  89 aaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatattgtt 152  Q
    ||||||||||   ||| ||| ||||||||| ||||| |||||||||||||||||||||||||||    
T  38237540 aaaatgttatactgttggtgtcattgaaaaagataagaatttatattatatttgttatattgtt 38237477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 24650006 - 24650051
Alignment:
Q  110 cattgaaaatgataaaaatttatattatatttgttatattgttggt 155  Q
    |||| |||| ||||| ||||||||||||||||||||||||||||||    
T  24650006 cattcaaaaagataagaatttatattatatttgttatattgttggt 24650051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 43358742 - 43358815
Alignment:
Q  69 tttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttg 142  Q
    |||||| ||||||| |||| |||||||||||| ||| |||  ||| |||| ||||| |||||||||||||||||    
T  43358742 tttaaataaatttgactataaaaatgttattttgttggtgtaatttaaaaagataagaatttatattatatttg 43358815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 7606263 - 7606327
Alignment:
Q  91 aatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatattgttggt 155  Q
    |||||||||| |||  || |||| |||| ||||||||||||||||||||| |||| |||||||||    
T  7606263 aatgttattttgttgatgtcattcaaaaagataaaaatttatattatattagttaaattgttggt 7606327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 28069721 - 28069670
Alignment:
Q  95 ttatttagttagtgccattgaaaatgataaaaatttatattatatttgttat 146  Q
    |||||| ||||||| |||| |||| ||||| |||||||||||||||||||||    
T  28069721 ttattttgttagtgtcattcaaaaagataagaatttatattatatttgttat 28069670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 35338347 - 35338426
Alignment:
Q  70 ttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatatt 149  Q
    ||||||| |||||||| | | |||||||| | ||| ||| |||| |||| ||||| |||||||||||||||| |||||||    
T  35338347 ttaaacatatttgtctgttagaatgttatattgttggtgtcattaaaaaagataagaatttatattatatttattatatt 35338426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 156
Target Start/End: Complemental strand, 36471633 - 36471598
Alignment:
Q  121 ataaaaatttatattatatttgttatattgttggtg 156  Q
    |||| |||||||||||||||||||||||||||||||    
T  36471633 ataataatttatattatatttgttatattgttggtg 36471598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 10039991 - 10039945
Alignment:
Q  110 cattgaaaatgataaaaatttatattatatttgttatattgttggtg 156  Q
    |||| |||| ||||| ||||||||||||||||| |||||||||||||    
T  10039991 cattcaaaaagataataatttatattatatttgctatattgttggtg 10039945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 15753664 - 15753630
Alignment:
Q  121 ataaaaatttatattatatttgttatattgttggt 155  Q
    |||||| ||||||||||||||||||||||||||||    
T  15753664 ataaaactttatattatatttgttatattgttggt 15753630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 32358849 - 32358927
Alignment:
Q  71 taaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatatt 149  Q
    ||||||||||||  ||| |||||||||| |  ||  || ||||||||| ||||| ||||||||||||||||| ||||||    
T  32358849 taaacaaatttgcatataaaaatgttatatttttgttgtcattgaaaaagataagaatttatattatatttggtatatt 32358927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 35791991 - 35792023
Alignment:
Q  124 aaaatttatattatatttgttatattgttggtg 156  Q
    |||||| ||||||||||||||||||||||||||    
T  35791991 aaaattaatattatatttgttatattgttggtg 35792023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 153
Target Start/End: Complemental strand, 47437879 - 47437795
Alignment:
Q  69 tttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatattgttg 153  Q
    |||||||| ||||| |||| | ||| | |||| ||| |||  ||| |||| ||||| |||||||||||||||| |||||||||||    
T  47437879 tttaaacatatttgactataagaatttgattttgttggtgttattaaaaaagataagaatttatattatattttttatattgttg 47437795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 4608715 - 4608669
Alignment:
Q  110 cattgaaaatgataaaaatttatattatatttgttatattgttggtg 156  Q
    |||| |||| ||||| |||||||||||||||||||||||||||||||    
T  4608715 cattcaaaaagataagaatttatattatatttgttatattgttggtg 4608669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 156
Target Start/End: Original strand, 3092369 - 3092456
Alignment:
Q  69 tttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatattgttggtg 156  Q
    ||||| |||||||| ||||||||||||||| | |||  ||  ||| |||| |||||||||||| ||| ||||||  ||||||||||||    
T  3092369 tttaagcaaatttgcctatgaaaatgttatattgttgatgtaattaaaaaagataaaaatttagattgtatttgcaatattgttggtg 3092456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 156
Target Start/End: Original strand, 47723083 - 47723118
Alignment:
Q  121 ataaaaatttatattatatttgttatattgttggtg 156  Q
    ||||||||||||||||||||||||| ||||||||||    
T  47723083 ataaaaatttatattatatttgttacattgttggtg 47723118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 4505794 - 4505879
Alignment:
Q  70 ttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatattgttggtg 156  Q
    ||||||| ||||| |||| | |||  ||||| ||| ||| |||| |||| ||||| |||||||||||||||| ||||||||||||||    
T  4505794 ttaaacatatttgactataataatcctattttgttggtgtcattcaaaaagataagaatttatattatattt-ttatattgttggtg 4505879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 152
Target Start/End: Complemental strand, 4523922 - 4523880
Alignment:
Q  110 cattgaaaatgataaaaatttatattatatttgttatattgtt 152  Q
    ||||||||| || |||||||||| |||||||||||||||||||    
T  4523922 cattgaaaaagaaaaaaatttatgttatatttgttatattgtt 4523880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 48458446 - 48458512
Alignment:
Q  89 aaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatattgttggt 155  Q
    |||||||||||| ||| ||| | || ||||  |||| |||||||||||||||||||||||| |||||    
T  48458446 aaaatgttattttgttggtgtcgttcaaaaaaataagaatttatattatatttgttatattattggt 48458512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 46058392 - 46058469
Alignment:
Q  69 tttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttat 146  Q
    ||||||||||||||  ||| |||||| ||  | ||| |||||||| ||||  |||||| |||||||||||||||||||    
T  46058392 tttaaacaaatttgcatataaaaatgatacattgttggtgccattcaaaaatataaaagtttatattatatttgttat 46058469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 20004835 - 20004775
Alignment:
Q  89 aaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatatt 149  Q
    |||||| ||||| ||| ||| |||| ||||  |||| ||||||||||||||||||||||||    
T  20004835 aaaatgctattttgttggtgtcattaaaaaatataagaatttatattatatttgttatatt 20004775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 44689815 - 44689859
Alignment:
Q  112 ttgaaaatgataaaaatttatattatatttgttatattgttggtg 156  Q
    |||||||  |||| ||||||||||||||||||||||| |||||||    
T  44689815 ttgaaaaaaataataatttatattatatttgttatatcgttggtg 44689859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 45637870 - 45637838
Alignment:
Q  121 ataaaaatttatattatatttgttatattgttg 153  Q
    |||| ||||||||||||||||||||||||||||    
T  45637870 ataagaatttatattatatttgttatattgttg 45637838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 48458033 - 48458117
Alignment:
Q  69 tttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatattgttg 153  Q
    |||||| ||| ||| |||| | |||| ||||| ||| |||  ||| |||| ||||| | ||||||||||||||||||||||||||    
T  48458033 tttaaaaaaacttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgttatattgttg 48458117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 28247325 - 28247375
Alignment:
Q  92 atgttatttagttagtgccattgaaaatgataaaaatttatattatatttg 142  Q
    ||||||| |||||  || |||||||||||||||||||||||||||||||||    
T  28247325 atgttatatagttgatgtcattgaaaatgataaaaatttatattatatttg 28247375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 50585778 - 50585816
Alignment:
Q  115 aaaatgataaaaatttatattatatttgttatattgttg 153  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  50585778 aaaaagataaaaatttatattatatttgttatattgttg 50585816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 1338122 - 1338193
Alignment:
Q  71 taaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttg 142  Q
    ||||||||||| | ||| |||||||||| | ||| ||| ||||||||||||||| | |||||| ||||||||    
T  1338122 taaacaaatttttgtataaaaatgttatattgttggtgtcattgaaaatgataagagtttatactatatttg 1338193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 2594472 - 2594551
Alignment:
Q  70 ttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatatt 149  Q
    |||| |||||||| | || | |||||||||| | | ||| |||| |||| ||||| ||||||||||||||||||||||||    
T  2594472 ttaatcaaatttgaccataacaatgttattttgctggtgtcattcaaaaagataagaatttatattatatttgttatatt 2594551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 47410014 - 47409964
Alignment:
Q  102 gttagtgccattgaaaatgataaaaatttatattatatttgttatattgtt 152  Q
    ||||||| |||||| || ||||||| ||||||||||||||| |||||||||    
T  47410014 gttagtgtcattgataaagataaaagtttatattatatttgctatattgtt 47409964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 28170641 - 28170682
Alignment:
Q  115 aaaatgataaaaatttatattatatttgttatattgttggtg 156  Q
    |||| ||||| |||||||||||||||||||| ||||||||||    
T  28170641 aaaaagataagaatttatattatatttgttacattgttggtg 28170682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 36643640 - 36643583
Alignment:
Q  91 aatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatat 148  Q
    |||||||||| ||| ||  |||| |||| ||||| |||||||||||||||||||||||    
T  36643640 aatgttattttgttggtatcattcaaaacgataagaatttatattatatttgttatat 36643583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 42618143 - 42618184
Alignment:
Q  115 aaaatgataaaaatttatattatatttgttatattgttggtg 156  Q
    |||| ||||| |||||||||||||||||||| ||||||||||    
T  42618143 aaaaagataagaatttatattatatttgttacattgttggtg 42618184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 47968346 - 47968387
Alignment:
Q  115 aaaatgataaaaatttatattatatttgttatattgttggtg 156  Q
    |||| ||||| ||||||||||| |||||||||||||||||||    
T  47968346 aaaaagataagaatttatattacatttgttatattgttggtg 47968387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 51940251 - 51940284
Alignment:
Q  123 aaaaatttatattatatttgttatattgttggtg 156  Q
    ||||||||||||||||||||||||||| ||||||    
T  51940251 aaaaatttatattatatttgttatattattggtg 51940284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 27371328 - 27371280
Alignment:
Q  107 tgccattgaaaatgataaaaatttatattatatttgttatattgttggt 155  Q
    |||||||||||  ||||||  || |||||||||||||||||||||||||    
T  27371328 tgccattgaaagagataaattttgatattatatttgttatattgttggt 27371280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 149
Target Start/End: Original strand, 65530 - 65595
Alignment:
Q  84 ctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgttatatt 149  Q
    |||| ||||| |||||| ||| ||  |||| |||| ||||| ||||||||||||||||||||||||    
T  65530 ctataaaaatattattttgttggtatcattcaaaaagataagaatttatattatatttgttatatt 65595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 20913 - 20848
Alignment:
Q  76 aaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatattt 141  Q
    ||||||| |||| | ||||||||||||||  || ||||| ||| ||||| ||||||||||||||||    
T  20913 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataagaatttatattatattt 20848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 19958 - 20023
Alignment:
Q  76 aaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgt 143  Q
    ||||||| |||| | |||||||||||||| ||  ||||| ||| ||||| ||||||||||||||||||    
T  19958 aaatttgactataagaatgttatttagtttgt--cattgcaaaagataagaatttatattatatttgt 20023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 53693 - 53765
Alignment:
Q  69 tttaaacaaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgtt 144  Q
    ||||||||||||| ||||| | |||||||| | |||   | |||| |||| |||||||||||||||||||||||||    
T  53693 tttaaacaaatttttctataataatgttatattgtt---gtcattaaaaaagataaaaatttatattatatttgtt 53765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 72141 - 72189
Alignment:
Q  107 tgccattgaaaatgataaaaatttatattatatttgttatattgttggt 155  Q
    |||||||||||  ||||||| || ||||||||||||||||||| |||||    
T  72141 tgccattgaaagagataaaatttgatattatatttgttatattattggt 72189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 36543 - 36511
Alignment:
Q  123 aaaaatttatattatatttgttatattgttggt 155  Q
    ||||| |||||||||||||||||||||||||||    
T  36543 aaaaaattatattatatttgttatattgttggt 36511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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