View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_high_15 (Length: 486)
Name: NF13955_high_15
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 12 - 471
Target Start/End: Original strand, 13383716 - 13384169
Alignment:
| Q |
12 |
tattctcatatgaagtcgtgaaaagttagttgaaatgatttagaatttgatataagttaggaaacaaagtttgattatgtatttaagttaacttatataa |
111 |
Q |
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| T |
13383716 |
tattctcatatgaagtcgtgaaaagttagttgaaatgatttagaatttgatataagttaggaaacaaagtttgattatgtatttaagttaacttatataa |
13383815 |
T |
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| Q |
112 |
ggatacctcaagggtcactattttaaataaaaaaccgtttcttaggttcattgaataaataatgcatacactaatattataaatcattataaatcaggtg |
211 |
Q |
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| T |
13383816 |
ggatacctcaagggtcactattttaaataaaaaaccgtttcttaggttcattaaataaataatgcatataccaat----------attataaatcaggtg |
13383905 |
T |
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| Q |
212 |
tatgtaaattattgtctcatgtcacatgacataagagttctttgaaataagcttttgatttggtaggtaagagaattaaaaggaaagagaatttgagatn |
311 |
Q |
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| T |
13383906 |
tatgtaaattattgtctcatgtcacatgacataagagttctttgaaataagcttttgatttggtaggtaagagaattaaaaggaaagagaatttgagat- |
13384004 |
T |
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| Q |
312 |
nnnnnnggggaaaataagtttaa-ggttgagatttctcaacatgaggaaatttaacttgagagaatctcctccctcatatgcataag----nnnnnnnnn |
406 |
Q |
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| T |
13384005 |
aaaaaaggggaaaataagtttaagggttgagatttctcaacatgaggaaatttaacttgagagaatctcctccctcatatgcataagttttttttttttt |
13384104 |
T |
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| Q |
407 |
nngagagatcatatacataagttattaaataaaggagtttttgttgcatataataatgagggtag |
471 |
Q |
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| T |
13384105 |
ttgagagatcatatacataagttattaaataaaggagtttttgttgcatacaataatgagggtag |
13384169 |
T |
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