View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_high_20 (Length: 465)
Name: NF13955_high_20
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 361
Target Start/End: Original strand, 44199316 - 44199658
Alignment:
| Q |
19 |
gtttcgggctatggcctcgctcgcatatcctccttcttccccaaactcatgtggtccgagggatttaccatcgttggatcccctcttgatcattttcaac |
118 |
Q |
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| T |
44199316 |
gtttcgggctatggcctcgctcgcatatcctccttcttccccaaactcatgtggtctgagggatttaccatcgttggatcccctcttgatcattttcaac |
44199415 |
T |
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| Q |
119 |
aactttggcctcaagattatgccaaacactggtgagcgccattaagagtcttacattagatataatatactttgaaaaatacttttcaagtaaaatatta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44199416 |
aactttggcctcaagattatgccaaacactggtgagtgccattaagagtcttacattagatataatatactttgaaaaatacttttcaagtaaaatatta |
44199515 |
T |
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| Q |
219 |
tttttcaacttatactcgtgtgatatcaagtattaggtctaacttaagttttaagatattccaaccatcttcttgatgtgtgtgtgatgtgtcctcaatt |
318 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
44199516 |
tttttcaacttatactcgtgtgatatcaaatattaggtctaacttaagttttaagatattccaaccatctttttgatttgtgtgtgatgtgtcctcaatt |
44199615 |
T |
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| Q |
319 |
cacatccaatgctacaaaaacaataattaagctaactaactac |
361 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44199616 |
ctcatccaatgctacaaaaacaataattaagctaactaactac |
44199658 |
T |
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