View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_high_24 (Length: 446)
Name: NF13955_high_24
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 17 - 429
Target Start/End: Complemental strand, 24852776 - 24852363
Alignment:
| Q |
17 |
tataacactggtcgtggccaaggtcgctttgattgaagccgtggctcttttcatcccgagtatcaaatttatgcttcagttgggcatatgatgctactcg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24852776 |
tataacactggtcgtggccaaggtcgctttgattgaagccgtggctcttttcatcccgagtatcaaatttatgcttcagttgggcatatgatgctactcg |
24852677 |
T |
|
| Q |
117 |
ttttcggtatctttttgatcataattctaatggttaatttgctcatccagctccaagacctcaatttcctctgcacctgcttctcatcttgatacaacct |
216 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24852676 |
ttttcggtatcttttttatcataattctaatggttaatttgctcatccagctccaagacctcaatttcctctgcacctgcttctcatcttgatacaacct |
24852577 |
T |
|
| Q |
217 |
ggtatctagattttggtgcttcacatcatctcacatccattcagaaaaacctagataatggccaagaacaagtcataatgggaaatggtcatggtatgcc |
316 |
Q |
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| T |
24852576 |
ggtatctagattttggtgcttcacatcatctcacatccattcagaaaaacctagataatggccaagaacaagtcataatgggaaatggtcatggtatgcc |
24852477 |
T |
|
| Q |
317 |
aattctttctttaggtcactacacaattttttcttatactc-acctcgacctagtgtagcttttcattaatttaactatataatctcatgtcagttacta |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24852476 |
aattctttctttaggtcactacacaattttttcttatactcgacctcgacctagtgtagcttttcattaatttaactatataatctcatgtcagttacta |
24852377 |
T |
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| Q |
416 |
aatttgctcatgac |
429 |
Q |
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| T |
24852376 |
aatttgctcatgac |
24852363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 270 - 332
Target Start/End: Complemental strand, 24851200 - 24851138
Alignment:
| Q |
270 |
gataatggccaagaacaagtcataatgggaaatggtcatggtatgccaattctttctttaggt |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
24851200 |
gataatggccaagaacaagtcataatgggaaatggtcaaggtatgccaattccttctttaggt |
24851138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 24848335 - 24848173
Alignment:
| Q |
23 |
actggtcgtggccaaggtcgctttgattgaagccgtggctcttttcatcccgagtatcaaatttatgcttcagttgggcatatgatgctactcgttttcg |
122 |
Q |
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||||||| |||| || ||||||||| |||| | | |||||||||||||| | | ||||| || ||||| |||||| ||| ||||||||||||| ||| |
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| T |
24848335 |
actggtcatggcaaaagtcgctttggttgaggtcctggctcttttcatctccaaattcaaacttgtgcttgagttggacat--gatgctactcgttctcg |
24848238 |
T |
|
| Q |
123 |
gtatctttttgatcataattctaatggttaatttgctcatccagctccaagacctcaatttcctc |
187 |
Q |
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||||| |||||| | | | ||||||||||||||| |||||||||||||| | |||||||||||| |
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| T |
24848237 |
atatctatttgataaaactgctaatggttaatttggtcatccagctccaaaatctcaatttcctc |
24848173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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