View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_high_26 (Length: 435)
Name: NF13955_high_26
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 16 - 365
Target Start/End: Original strand, 21839603 - 21839956
Alignment:
| Q |
16 |
gaatgaactcctagccaattacgaacaagttgccaaattattccnnnnnnngtacaatac--aaagttaaatgattctaacactccgcaaccaccaacac |
113 |
Q |
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| T |
21839603 |
gaatgaactcctagccaattacgaacaagttgccaaattgttccaaaaaaagtacaatttttaaagttaaatgattctaacactccgtaaccaccaacac |
21839702 |
T |
|
| Q |
114 |
acaattgggactcctgagatataattcatt--ccatgagatttaaaaactccataaaactaatgattttataattttggatcctaatgctgttttatata |
211 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21839703 |
acaactgggactcctgagatataattcattttccatgagatttaaaaactccataaaactaatgattttataattttggatcctaatattgttttatata |
21839802 |
T |
|
| Q |
212 |
tttgaacccatgacactagttttaaattttatgattctaatatttatttacaannnnnnnaaaggaattaattatgtacttttataatctatatatgcca |
311 |
Q |
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| T |
21839803 |
tttgaacccataacactagttttaaattttatgattctaatatttatttacaatttttttaaaggaattaattatgtacttttataatctatatatgcca |
21839902 |
T |
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| Q |
312 |
aaaatattgattagaagttaataccccgtcccaaatatacaagactctcttgag |
365 |
Q |
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| T |
21839903 |
aaaatattgattagaagttaataccccgtcccaaatatacaagactctcttgag |
21839956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 29546430 - 29546392
Alignment:
| Q |
16 |
gaatgaactcctagccaattacgaacaagttgccaaatt |
54 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |
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| T |
29546430 |
gaatgaactcctagccaatttcgaacaagttgccaaatt |
29546392 |
T |
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