View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13955_high_27 (Length: 433)
Name: NF13955_high_27
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_high_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 33253191 - 33252889
Alignment:
| Q |
1 |
acaccctagaaaattggttaaaaacacgactagcaagtaacaagaaaaaatagggcagacaatgatatttttatccaaaagagtggatagtggggactgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33253191 |
acaccctagaaaattggttaaaaacacgactagcaagtaacaagaaaaaatagggcagacgatgatatttttatccaaaagagtggatagtggggactgc |
33253092 |
T |
|
| Q |
101 |
tacacatgttcataggaactagtaaacatcaagaaccgtactcagcatatcatcaaactctaaaattattcacacacataatgcggctctattggtcatg |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33253091 |
tacacatgttcataggaaccggtaaacatcaataaccgtactcagcatatcatcaaactctaaaattattcacacacataatgcggctctat---tcatg |
33252995 |
T |
|
| Q |
201 |
tagaccagtcataaggcttgatagatgtacataaaggatggattatatatacttgtttcaaccacataatgtaaataatgaagatatcatcttttttgta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33252994 |
tagaccagtcataaggcttgatagatgtacataaaggatggattatatatacttgtttcaaccacataatgtaaataatgaagatatcatcttttttgta |
33252895 |
T |
|
| Q |
301 |
acatga |
306 |
Q |
| |
|
|||||| |
|
|
| T |
33252894 |
acatga |
33252889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 413
Target Start/End: Complemental strand, 33252483 - 33252449
Alignment:
| Q |
379 |
taataattaagatggttgcatcaatatgaccccac |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
33252483 |
taataattaagatggttgcatcaatatgacaccac |
33252449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 387
Target Start/End: Complemental strand, 33252865 - 33252799
Alignment:
| Q |
330 |
cttatgccaagatctccaaaatgtgtta---------gttccttaacctatatttatttaataatta |
387 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
33252865 |
cttatgccaagatctccaaaatgtgttacatactttagttcattaacctatatttatttaataatta |
33252799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University