View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_high_28 (Length: 430)
Name: NF13955_high_28
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 213 - 412
Target Start/End: Complemental strand, 44491092 - 44490898
Alignment:
| Q |
213 |
tgtgaatgcttttacatttattttgaaattggagaataatctctaacactcaagtcctttatttaggaaaagtgaagtttatactaatatagcaagctag |
312 |
Q |
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| T |
44491092 |
tgtgaatgcttttacatttattttgaaattggagaataatctctaacactcaagtcctttatttaggaaaagtgaagtttctactaatatagca----ag |
44490997 |
T |
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| Q |
313 |
cctttactactgagtttcagagtgaatgtgacagggcaagatccgtgcatagttgtgacctgttaccaatggagcagcgcatatgcaacgagattgggta |
412 |
Q |
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| T |
44490996 |
cctttactactgagtttcagagtgaatgtgacagggcaagatccgtgcatagttgtgacctgttaccaatggagcagcgca-atgcaacgagattgggta |
44490898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 44491249 - 44491179
Alignment:
| Q |
12 |
gaaccttaatccattcttaatgggggaattacacgataagaataagacagtacttgttgggtgagtgtagg |
82 |
Q |
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| T |
44491249 |
gaaccttaatccattcttaatgggggaattacacgataagaataagacagtacttgttgggtgagtgtagg |
44491179 |
T |
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