View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_high_30 (Length: 424)
Name: NF13955_high_30
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 23 - 381
Target Start/End: Complemental strand, 2411218 - 2410859
Alignment:
| Q |
23 |
tcgtatgaggggaatattcaattctagaa-attatatttctttgtctaaaaacaacagcatcgtgctgaaaatcagaatcctcatgaggagtatgggata |
121 |
Q |
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| T |
2411218 |
tcgtatgaggggaatattcaattctagaatattatatttctttgtctaaaaacaacagcatcgtgctgaaaatcagaatcctcatgaggagtatgggata |
2411119 |
T |
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| Q |
122 |
ccactattgaatnnnnnnntcagccaacaatgagcagcgtcttagaatattaggatattgctaagtgctaacattacttaatatttgtccaaggtggcct |
221 |
Q |
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| T |
2411118 |
ccactattgaataaaaaaatcagccaacaatgagcagcttcttagaatattaggatattgctaagtgctaacattgcttaatatttgtccaaggtggcct |
2411019 |
T |
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| Q |
222 |
tgatcaaatttgttgtgctcataatagtttgtaaattcttttgggcaaacaataccactcaatcattagctatagtagaaattgaaagattagtttattg |
321 |
Q |
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| T |
2411018 |
tgatcaaatttgttgtgctcataatagtttgtaaattcttttgggcaaacaataccactcaatcattagctatagtagaaattgaaagattagtttattg |
2410919 |
T |
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| Q |
322 |
gtcagatgaattagttgcaactcctttaagagttagttagtcttcttttgatcaaaggta |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2410918 |
gtcagatgaattagttgcaactcctttaagagttagttagtcttcttttgatcaaaggta |
2410859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 2413150 - 2413066
Alignment:
| Q |
19 |
catgtcgtatgaggggaatattcaattctagaa-attatatttctttgtctaaaaacaacagcatcgtgctgaaaatcagaatcc |
102 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
2413150 |
catgtcgtatgaggggaatattcaattctagaatattatatttctttgtccaaaaacaacagcatcgtgctgaaaataagaatcc |
2413066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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