View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13955_high_32 (Length: 408)
Name: NF13955_high_32
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_high_32 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 27214876 - 27215247
Alignment:
| Q |
18 |
ttcttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaagcaaccacattcccatcagtacctatcact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27214876 |
ttcttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcgctcttacaagcaaccacactcccatcagtacctatcact |
27214975 |
T |
|
| Q |
118 |
tggagctctgaagggcacacaacattaatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggtgttacagacattggcacgttga |
217 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27214976 |
tggagctctgaaggacacacaacattgatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttga |
27215075 |
T |
|
| Q |
218 |
atccatccacattgctcacatcgtagaaatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgca |
317 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27215076 |
atccatccacattgctcacatcatagaaatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccattgca |
27215175 |
T |
|
| Q |
318 |
accgagttgaccagaggcacaatcggcggtggcacagctgaactttccattgttgttggagcatccggttcg |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27215176 |
accgagttgaccagaggcacaatcggcggtggcacagctgaactttccattgttgttgaagcatccggttcg |
27215247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 27444025 - 27443654
Alignment:
| Q |
18 |
ttcttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaagcaaccacattcccatcagtacctatcact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27444025 |
ttcttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcgctcttacaagcaaccacactcccatcagtacctatcact |
27443926 |
T |
|
| Q |
118 |
tggagctctgaagggcacacaacattaatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggtgttacagacattggcacgttga |
217 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27443925 |
tggagctctgaaggacacacaacattgatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttga |
27443826 |
T |
|
| Q |
218 |
atccatccacattgctcacatcgtagaaatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgca |
317 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27443825 |
atccatccacattgctcacatcttagaaatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccattgca |
27443726 |
T |
|
| Q |
318 |
accgagttgaccagaggcacaatcggcggtggcacagctgaactttccattgttgttggagcatccggttcg |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27443725 |
accgagttgaccagaggcacaatcggcggtggcacagctgaactttccattgttgttgaagcatccggttcg |
27443654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Original strand, 27432585 - 27432957
Alignment:
| Q |
18 |
ttcttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaagcaaccacattcccatcagtacctatcact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
27432585 |
ttcttcggtattgtaatctccacgacaacaatatttatcttcgtttaaagccaaacaagcgctcttacaagcaaccacactcccatcagaacctatcact |
27432684 |
T |
|
| Q |
118 |
tggagctctgaagggcacacaacattaatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggtgttacagacattggcacgttga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27432685 |
tggagctctgaagggcacacaacattaatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttga |
27432784 |
T |
|
| Q |
218 |
atccatccacattgctcacatcgtagaaatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgca |
317 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27432785 |
atccatccacattgctcacatcatagaaatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttaca |
27432884 |
T |
|
| Q |
318 |
accgagttgaccagaggcacaatcggcggtggcacagctgaactttccattgttgttggagcatccggttcgt |
390 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27432885 |
accgacttgaccagaggcacaatcggcggtggcacaactgaactttccattgttgttggagcatccggttcgt |
27432957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 27220838 - 27221209
Alignment:
| Q |
18 |
ttcttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaagcaaccacattcccatcagtacctatcact |
117 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||| || ||| |
|
|
| T |
27220838 |
ttcttcagtattgaaatctccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaggcaatcacactcccatcagtaccaataact |
27220937 |
T |
|
| Q |
118 |
tggagctctgaagggcacacaacattaatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggtgttacagacattggcacgttga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27220938 |
tggagctctgaagggcacacaacattaatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttga |
27221037 |
T |
|
| Q |
218 |
atccatccacattgctcacatcgtagaaatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgca |
317 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27221038 |
atccgtccacattgctcacatcgtagaagtcttgtcccccgtctgttgctaccgttatttctaccaatgttgctggtgggattgccccagcaccgttgca |
27221137 |
T |
|
| Q |
318 |
accgagttgaccagaggcacaatcggcggtggcacagctgaactttccattgttgttggagcatccggttcg |
389 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27221138 |
accgacttgaccagaggcacaatcggcggtggcacagctgaactttccattgttgttgaagcatccggttcg |
27221209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 27207505 - 27207876
Alignment:
| Q |
18 |
ttcttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaagcaaccacattcccatcagtacctatcact |
117 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||| ||||||||| ||| ||||| |
|
|
| T |
27207505 |
ttcttcagtattgaaatctccacgacaacaatatttatcttcctttaaagccaaacaagcgctcttacaagcaaacacactcccatcagaaccaatcacc |
27207604 |
T |
|
| Q |
118 |
tggagctctgaagggcacacaacattaatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggtgttacagacattggcacgttga |
217 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||| |||| ||||| ||||| |||| |
|
|
| T |
27207605 |
tggagctctgaaggacacacaacattaatgttcctaggacaactagcggttttgcagtcaccactcccaccttgtggcattacggacatgggcacattga |
27207704 |
T |
|
| Q |
218 |
atccatccacattgctcacatcgtagaaatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgca |
317 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27207705 |
acccatcaacattgctcacatcgtagaaatcttgtcccccgttggatgctattgttatttctaccagtgttgctggtgggattgcgccagcaccgttgca |
27207804 |
T |
|
| Q |
318 |
accgagttgaccagaggcacaatcggcggtggcacagctgaactttccattgttgttggagcatccggttcg |
389 |
Q |
| |
|
||||| |||||| |||||||||||||||||||| ||||||||| |||| ||||||| ||||||||| ||||| |
|
|
| T |
27207805 |
accgacttgaccggaggcacaatcggcggtggcgcagctgaaccttccgttgttgtcggagcatccagttcg |
27207876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 20 - 388
Target Start/End: Original strand, 27409757 - 27410125
Alignment:
| Q |
20 |
cttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaagcaaccacattcccatcagtacctatcacttg |
119 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||| ||| |||||||| |||||||||||||||||||| ||| ||||||||| |||| | ||||| |
|
|
| T |
27409757 |
cttcggtattgtaacttccacgacaacaatattgatctgtattaaaagccaagcaagcactcttacaagcaacgacactcccatcagaaccttttacttg |
27409856 |
T |
|
| Q |
120 |
gagctctgaagggcacacaacattaatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggtgttacagacattggcacgttgaat |
219 |
Q |
| |
|
|| |||| || |||||| | || || || |||||||||| | || |||||| ||| ||||||||||||| |||||| | |||||||||||||| |
|
|
| T |
27409857 |
aagttctgcgggacacacagcgttgatatttgctggacaactagcggctttgcaagggccattcccaccttgtggagttacaaaaattggcacgttgaac |
27409956 |
T |
|
| Q |
220 |
ccatccacattgctcacatcgtagaaatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgcaac |
319 |
Q |
| |
|
|| || || |||||||||||||||||||||||||| || |||| ||| | ||| ||||| || || |||||||||||||||||||||||||| ||||| | |
|
|
| T |
27409957 |
ccgtcaacgttgctcacatcgtagaaatcttgtcctccatttgatgccatggtaatttcaactaaagttgctggtgggattgcgccagcaccattgcacc |
27410056 |
T |
|
| Q |
320 |
cgagttgaccagaggcacaatcggcggtggcacagctgaactttccattgttgttggagcatccggttc |
388 |
Q |
| |
|
| | ||||||||| |||||||||| |||||||| || |||||| | |||||| | ||||||||||||| |
|
|
| T |
27410057 |
ccacttgaccagacccacaatcggctgtggcacaactaaacttttctttgttgattgagcatccggttc |
27410125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 36 - 389
Target Start/End: Original strand, 27388817 - 27389170
Alignment:
| Q |
36 |
tccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaagcaaccacattcccatcagtacctatcacttggagctctgaagggcac |
135 |
Q |
| |
|
||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||| ||| | ||||||| |||| | | ||| ||||| | || ||| |
|
|
| T |
27388817 |
tccacgacaacaatattgatcggtattaaaagccaaacaagcactcttacaagcaacgacacttccatcagaaccttttaattgaagctccgcgggacac |
27388916 |
T |
|
| Q |
136 |
acaacattaatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggtgttacagacattggcacgttgaatccatccacattgctca |
235 |
Q |
| |
|
||| || ||||| ||||||| || |||| |||||| || ||||| || |||||||| ||||| ||||||||||||||||| || || || ||||||| |
|
|
| T |
27388917 |
acagagttgatgtttgctggacagctagaggatttgcaatcgccacttccgccttgtggagttacggacattggcacgttgaaaccgtcaacgttgctca |
27389016 |
T |
|
| Q |
236 |
catcgtagaaatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggc |
335 |
Q |
| |
|
||||||||||||||||||| || |||| ||| || || ||||| ||||| |||||||||||||||||||||||||| ||||| | | ||||||||| || |
|
|
| T |
27389017 |
catcgtagaaatcttgtcctccatttgatgccactgtaatttcaaccaaagttgctggtgggattgcgccagcaccattgcatgcaacttgaccagatgc |
27389116 |
T |
|
| Q |
336 |
acaatcggcggtggcacagctgaactttccattgttgttggagcatccggttcg |
389 |
Q |
| |
|
||||||||| |||||||| | |||| ||| |||||| | |||||||||||||| |
|
|
| T |
27389117 |
acaatcggcagtggcacaagtaaactgtccgttgttggttgagcatccggttcg |
27389170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 20952530 - 20952617
Alignment:
| Q |
63 |
taaagccaaacaagcactcttacaagcaaccacattcccatcagtacctatcacttggagctctgaagggcacacaacattaatgttc |
150 |
Q |
| |
|
||||||||||||||| || |||||||| |||||| ||||||||| ||| |||||||||||||| |||| ||||||| |||||||||| |
|
|
| T |
20952530 |
taaagccaaacaagcgcttttacaagccaccacactcccatcagaaccggtcacttggagctcttaaggacacacaatattaatgttc |
20952617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 228 - 350
Target Start/End: Original strand, 27454712 - 27454834
Alignment:
| Q |
228 |
attgctcacatcgtagaaatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttga |
327 |
Q |
| |
|
|||||||||||| ||||||||||||| || || || || || |||||||||||||||||||||||||||||||| || ||| | ||| |||| | |||| |
|
|
| T |
27454712 |
attgctcacatcatagaaatcttgtctcctgtctgatgtaaccgttatttctaccaatgttgctggtgggattgcacctgcatcattggaacccatttga |
27454811 |
T |
|
| Q |
328 |
ccagaggcacaatcggcggtggc |
350 |
Q |
| |
|
|| ||| ||||||||| ||||| |
|
|
| T |
27454812 |
ccggagatacaatcggcagtggc |
27454834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 27416296 - 27416234
Alignment:
| Q |
29 |
tgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaagcaa |
91 |
Q |
| |
|
|||||||||||||||||||||||| || | ||| ||||||| ||||||||||||||||||| |
|
|
| T |
27416296 |
tgtaatctccacgacaacaatattgatatgtattaaaagccatgcaagcactcttacaagcaa |
27416234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 387
Target Start/End: Complemental strand, 27416142 - 27415937
Alignment:
| Q |
182 |
tcccaccttgtggtgttacagacattggcacgttgaatccatccacattgctcacatcgtagaaatcttgtcccccgtttgttgctacggttatttctac |
281 |
Q |
| |
|
|||||||| |||| |||||||| | |||||| ||||| |||| ||||||||| ||| ||||||||||| || |||| ||| || | || || || |
|
|
| T |
27416142 |
tcccacctcgtggagttacagatactggcacattgaacccataagtgttgctcacactgtataaatcttgtcctccatttgatgccactttaatgtcaac |
27416043 |
T |
|
| Q |
282 |
caatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggcggtggcacagctgaactttccattgttgttggagcat |
381 |
Q |
| |
|
|||||||||||||| ||| || ||||||| ||||| | | ||||||||| ||||||| | |||||||| || || ||||| || ||||| |||||| |
|
|
| T |
27416042 |
caatgttgctggtgtaattacgtcagcaccattgcactcaacttgaccagacccacaatcacctgtggcacaactaaaatttccgttattgtttgagcat |
27415943 |
T |
|
| Q |
382 |
ccggtt |
387 |
Q |
| |
|
|||||| |
|
|
| T |
27415942 |
ccggtt |
27415937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 20952648 - 20952716
Alignment:
| Q |
190 |
tgtggtgttacagacattggcacgttgaatccatccacattgctcacatcgtagaaatcttgtcccccg |
258 |
Q |
| |
|
||||| |||| ||||||| ||| ||||| | ||||||||||||||||| || ||||||||||||||| |
|
|
| T |
20952648 |
tgtggcgttattgacattgacacattgaacctgtccacattgctcacatcatataaatcttgtcccccg |
20952716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 350
Target Start/End: Complemental strand, 41458025 - 41457747
Alignment:
| Q |
72 |
acaagcactcttacaagcaaccacattcccatcagtacctatcacttggagctctgaagggcacacaacattaatgttccctggacaactggaggttttg |
171 |
Q |
| |
|
|||||||||||| |||||||| || |||||||||| ||| ||| || | ||||| ||||||||| | || || ||| | |||||||| |||| |||| |
|
|
| T |
41458025 |
acaagcactcttgcaagcaacaactttcccatcaggtcctttcatctgcaactctgtcgggcacacatcgttgatattcgcgggacaactcgagggtttg |
41457926 |
T |
|
| Q |
172 |
cagtcaccactcccaccttgtggtgttacagacattggcacgttgaatccatccacattgctcacatcgtagaaatcttgtcccccgtttgttgctacgg |
271 |
Q |
| |
|
|| ||||| | ||||||||||| | ||||| || |||||||| || || |||||||| | ||||||| | |||||||| ||||| | | ||||| |
|
|
| T |
41457925 |
caatcaccggttccaccttgtggaacaatggacatgggtacgttgaacccgtcaacattgcttatatcgtagtagtcttgtccaccgttggcttctacgt |
41457826 |
T |
|
| Q |
272 |
ttatttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggcggtggc |
350 |
Q |
| |
|
|| |||| | |||||||||||||| | ||| || ||||| |||||| ||| ||| || ||| ||||||| || ||||| |
|
|
| T |
41457825 |
gtagttctgctaatgttgctggtggaactgcaccggcaccattgcaagcgacttggccggagccacaatcagcagtggc |
41457747 |
T |
|
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