View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13955_high_33 (Length: 408)
Name: NF13955_high_33
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_high_33 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 44152683 - 44152470
Alignment:
| Q |
22 |
acggtcattttctcacagtattttaacggaatttttt-attaaatgcataaataactgtaccaactaactccgtgattcatat------gaaaaagttaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44152683 |
acggtcattttctcacagtattttaacggaatttttttattaaatgcataaataactgtaccaactaactccgtgattcatattcatatgaaaaagttaa |
44152584 |
T |
|
| Q |
115 |
aagtgaaattaaattcccggtaaagtgcttggaatggacaaaccactttttaaatttaccacggttccgctagttttctacttttcaattaaagccaaac |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44152583 |
aagtgaaattaaattcccggtaaagtgcttggaatggacaaaccactttttaaatttaccacgtttccgctagttttctacttttcaattaaagccaaac |
44152484 |
T |
|
| Q |
215 |
aaaattgctttttt |
228 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
44152483 |
aaaattgctttttt |
44152470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 308 - 389
Target Start/End: Complemental strand, 44152408 - 44152327
Alignment:
| Q |
308 |
ttgcatggactgggaacgaaagcgacgcaccgtaacggcacgattgagaagcaatttagagtaagcaggatcacgtgatctg |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44152408 |
ttgcatggactgggaacgaaagcgacgcaccgtaacggcacgattgagaagcaatttagagtaagcaggatcacgtgatctg |
44152327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University