View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_high_34 (Length: 398)
Name: NF13955_high_34
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_high_34 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 9 - 377
Target Start/End: Complemental strand, 13981899 - 13981533
Alignment:
| Q |
9 |
tattacaatgtacataagtgaaaattaagatcaaagcacaaattaccatcttggttttatttagaaacttggcatgagttgtgatatcaatggtggcacc |
108 |
Q |
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| T |
13981899 |
tattacaatgtacataagtgaaaattaagatcaaagcacaaattaccatcttggttttatttagaaacttggcatgagttgtgatagcaatggtggcacc |
13981800 |
T |
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| Q |
109 |
caaatatttaaagttctaggttgcaagttgtatgcgatattttaaaactcacgatttcgtatagaactgtattccagcagataatgtatttaagaaggaa |
208 |
Q |
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| T |
13981799 |
caaatatttaaagttctaggttgcaagtggtatgcgatattttaaaactcacgatttcgtatagaactgtattccagcagataatgtatttaagaaggaa |
13981700 |
T |
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| Q |
209 |
atattattatggaattggattcaaataatgctatagctttggtggaaaacaatgagacaagtccttggaatctatgnnnnnnnnnnnnngtattaaatat |
308 |
Q |
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| T |
13981699 |
atattattatggaattggattcaaataatgctatagctttggtggaaaacaatgagacaagtccttggaatc--tgtttttctttttttgtattaaatat |
13981602 |
T |
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| Q |
309 |
ggtgatataagatcaagaaggccattg--gtttgcatcatctctatatatgaatgctagcaaggtgtgcga |
377 |
Q |
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| T |
13981601 |
ggtgatataagatcaagaaggccattgatgtttgcatcatctc--tatatgaatgctagcaaggtgtgcga |
13981533 |
T |
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