View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_high_35 (Length: 396)
Name: NF13955_high_35
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_high_35 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 20 - 386
Target Start/End: Original strand, 30018786 - 30019157
Alignment:
| Q |
20 |
taaattattcaattaaaatttatcattttatgtttaagtatatcccatgaaagtaacatcaaagttttaaatattaaccaagataagcaaaactatagta |
119 |
Q |
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| T |
30018786 |
taaattattcaattaaaatttatcattttatgtttaagtatatcccatgaaagtaacatcaaagttttaaatattaaccaagataagcaaaactatagta |
30018885 |
T |
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| Q |
120 |
acatcaaataaattattcaattaaaattttctatctcatgacataagcaaaactatactacttaatgcaagttttataggtaggtaaacggtccatcaat |
219 |
Q |
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| T |
30018886 |
acatcaaataaattattcaattaaaattttctatctcatgacataagcaaaattatactacttaatgcaagttttataggtaggtaaacggtccatcaat |
30018985 |
T |
|
| Q |
220 |
ttcaacacatgtgtgagattaagtggtggcctagagaatgtataccatgt---atgattgatcatgcataccatagaagcatataac---taagtgtgga |
313 |
Q |
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| T |
30018986 |
ttcaacacatgtgtgagatgaagtggtggcctagagaatgtatatcatgtatgatgattgatcatgcataccatagaagcatataacttataagtgtgga |
30019085 |
T |
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| Q |
314 |
atatatcctctcnnnnnnnnngtgtggaatatatatgcatatatattatgtatctcttgtcttgcaccctatg |
386 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30019086 |
atatatcctct-aaaaaaaaagtgtggaatatatatgcatatatagtatgtatctcttgtcttgcaccctatg |
30019157 |
T |
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