View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_high_39 (Length: 365)
Name: NF13955_high_39
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 29225279 - 29225630
Alignment:
| Q |
1 |
attaaccaaatgcgtatattcttcccagacgaaccagccctccaagcccttagaggttccaacatagaattgatccttgatgtagctaaggaaactcttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
29225279 |
attaaccaaatgcgtatattcttcccagacgaaccagccctccaagcccttagaggttccaacatagaattgatccttgatgtggctaaggaaacccttc |
29225378 |
T |
|
| Q |
101 |
cttctcttagaaatgcaaatgaagccacaaattgggtcaacaaatatgtgagaccctatgctcaaaatgtaaaaatcaagtacatcagtgttggaaatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29225379 |
cttctcttagaaatgcaaatgaagccacaaattgggtcaacaaatatgtgagaccctatgctcaaaatgtaaaaatcaagtacatcagtgttggaaatga |
29225478 |
T |
|
| Q |
201 |
aattaaacctaatgacaatgaggcccaatacattctccctgccatgcaaaacattcaaaatgcaatttcatcagcaaatttacaaggccaaatcaaggtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29225479 |
aattaaacctaatgacaatgaggcccaatacattctccctgccatgcaaaacattcaaaatgcaatttcatctgcaaatttacaaggccaaatcaaggtc |
29225578 |
T |
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| Q |
301 |
tcaacagcaatagacatgactttgattggtaagtcatttccacccaatgatg |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29225579 |
tcaacagcaatagacatgactttgattggtaagtcatttccacccaatgatg |
29225630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 8 - 352
Target Start/End: Original strand, 29240462 - 29240806
Alignment:
| Q |
8 |
aaatgcgtatattcttcccagacgaaccagccctccaagcccttagaggttccaacatagaattgatccttgatgtagctaaggaaactcttccttctct |
107 |
Q |
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|||||||||||| |||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||| || |||||||| || ||||||| |
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| T |
29240462 |
aaatgcgtatatacttcccagacgaacaagcccttcaagcccttaaaggttccaacatagaattgatccttgatgtggccaaggaaaccctatcttctct |
29240561 |
T |
|
| Q |
108 |
tagaaatgcaaatgaagccacaaattgggtcaacaaatatgtgagaccctatgctcaaaatgtaaaaatcaagtacatcagtgttggaaatgaaattaaa |
207 |
Q |
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|| | ||| |||||||| |||||||||||| | |||||||||| ||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29240562 |
tacagatggcaatgaagctacaaattgggtccaaaaatatgtgacaccatatgctcaagatgtaaaaatcaagtacatcactgttggaaatgaaattaaa |
29240661 |
T |
|
| Q |
208 |
cctaatgacaatgaggcccaatacattctccctgccatgcaaaacattcaaaatgcaatttcatcagcaaatttacaaggccaaatcaaggtctcaacag |
307 |
Q |
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|||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29240662 |
cctaatgacaatgaagcccaatacattgccactgccatgcaaaacattcaaaatgcaatttcatcagcaaatttacaaggccaaatcaaggtctcaacag |
29240761 |
T |
|
| Q |
308 |
caatagacatgactttgattggtaagtcatttccacccaatgatg |
352 |
Q |
| |
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|||| ||||||||||||||||||| |||| |||||||||||||| |
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| T |
29240762 |
caattgacatgactttgattggtacttcatatccacccaatgatg |
29240806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 29229943 - 29230290
Alignment:
| Q |
1 |
attaaccaaatgcgtatattcttcccagacgaaccagccctccaagcccttagaggttccaacatagaattgatccttgatgtagctaaggaaactcttc |
100 |
Q |
| |
|
||||||||||||||| | | ||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||| ||| |
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| T |
29229943 |
attaaccaaatgcgtctttacttcccagatgaacaagccctccaagcccttagaggttccaacatagagttgatccttgatgtggctagggaaaccctta |
29230042 |
T |
|
| Q |
101 |
cttctcttagaaatgcaaatgaagccacaaattgggtcaacaaatatgtgagaccctatgctcaaaatgtaaaaatcaagtacatcagtgttggaaatga |
200 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||| | |||||||| ||||||||||| | |||| |||||||||||||||| ||| |||||||| |
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| T |
29230043 |
attctcttagaaatgccaatgaagccacaaattgggtcaatagatatgtgaaaccctatgctcgagatgttaaaatcaagtacatcactgtcggaaatga |
29230142 |
T |
|
| Q |
201 |
aattaaacctaatgacaatgaggcccaatacattctccctgccatgcaaaacattcaaaatgcaatttcatcagcaaatttacaaggccaaatcaaggtc |
300 |
Q |
| |
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|||||||||| | |||| ||| || |||| ||||||||||||||||||||||||||||||||| |||||| |||| |||||||| || |||||||||||| |
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| T |
29230143 |
aattaaaccttacgacagtgaagcacaatccattctccctgccatgcaaaacattcaaaatgctatttcagcagccaatttacagggacaaatcaaggtc |
29230242 |
T |
|
| Q |
301 |
tcaacagcaatagacatgactttgattggtaagtcatttccacccaat |
348 |
Q |
| |
|
|||| |||||| |||||||||||||||||||| |||| |||||||||| |
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|
| T |
29230243 |
tcaatagcaattgacatgactttgattggtaattcatatccacccaat |
29230290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 349
Target Start/End: Original strand, 29250736 - 29251077
Alignment:
| Q |
8 |
aaatgcgtatattcttcccagacgaaccagccctccaagcccttagaggttccaacatagaattgatccttgatgtagctaaggaaactcttccttctct |
107 |
Q |
| |
|
|||||||||||| || |||||| || || ||| ||||||||||||||||| ||||| ||||||||||||| ||| | |||||||| ||| | ||||| |
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| T |
29250736 |
aaatgcgtatatactacccagatcaagaagtcctacaagcccttagaggttctaacattgaattgatccttggtgtgaccaaggaaaccctttcctctct |
29250835 |
T |
|
| Q |
108 |
tagaaatgcaaatgaagccacaaattgggtcaacaaatatgtgagaccctatgctcaaaatgtaaaaatcaagtacatcagtgttggaaatgaaattaaa |
207 |
Q |
| |
|
|| | |||| |||||| |||||||||||| | || ||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29250836 |
tacagatgccggtgaagctacaaattgggtccaaaagtatgtgacaccctatgctcaagatgtaaaaatcaagtacatcactgttggaaatgaaattaaa |
29250935 |
T |
|
| Q |
208 |
cctaatgacaatgaggcccaatacattctccctgccatgcaaaacattcaaaatgcaatttcatcagcaaatttacaaggccaaatcaaggtctcaacag |
307 |
Q |
| |
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|||||||||||||| |||||||||||| | |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29250936 |
cctaatgacaatgaagcccaatacattgccactgccatgcagaacattcaaaatgcaatttcatctgcaaatttacaaggccaaatcaaggtctcaacag |
29251035 |
T |
|
| Q |
308 |
caatagacatgactttgattggtaagtcatttccacccaatg |
349 |
Q |
| |
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|||| |||||||||||||||||||| |||| ||||||||||| |
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|
| T |
29251036 |
caattgacatgactttgattggtaattcatatccacccaatg |
29251077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 29218190 - 29218250
Alignment:
| Q |
233 |
ttctccctgccatgcaaaacattcaaaatgcaatttcatcagcaaatttacaaggccaaat |
293 |
Q |
| |
|
|||| ||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||| |
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|
| T |
29218190 |
ttcttcctgcaatgcaaaacattcaaaaagcaatatcttcagcaaatttacaaggccaaat |
29218250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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