View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13955_high_44 (Length: 320)

Name: NF13955_high_44
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13955_high_44
NF13955_high_44
[»] chr4 (28 HSPs)
chr4 (10-305)||(12121225-12121520)
chr4 (17-279)||(1489155-1489417)
chr4 (12-305)||(1537535-1537828)
chr4 (123-301)||(1504883-1505061)
chr4 (10-134)||(1513346-1513470)
chr4 (22-216)||(1600467-1600661)
chr4 (145-216)||(55908585-55908656)
chr4 (88-236)||(547027-547175)
chr4 (101-205)||(8186959-8187063)
chr4 (12-72)||(1519143-1519203)
chr4 (10-72)||(532225-532287)
chr4 (10-72)||(55505109-55505171)
chr4 (10-55)||(1508021-1508066)
chr4 (10-71)||(7307896-7307957)
chr4 (11-72)||(8184031-8184092)
chr4 (10-206)||(553515-553711)
chr4 (123-247)||(558647-558771)
chr4 (145-236)||(532354-532445)
chr4 (17-60)||(659752-659795)
chr4 (10-69)||(1548428-1548487)
chr4 (10-69)||(1552771-1552830)
chr4 (23-69)||(570400-570446)
chr4 (170-216)||(570727-570773)
chr4 (178-236)||(1548263-1548321)
chr4 (10-72)||(12116576-12116638)
chr4 (10-71)||(1545809-1545870)
chr4 (11-72)||(8187092-8187153)
chr4 (178-246)||(21834208-21834276)
[»] chr8 (7 HSPs)
chr8 (10-279)||(18315067-18315336)
chr8 (22-227)||(32151349-32151551)
chr8 (10-71)||(27922544-27922605)
chr8 (180-235)||(17627897-17627952)
chr8 (23-69)||(21235607-21235653)
chr8 (11-72)||(34936164-34936225)
chr8 (29-73)||(17636401-17636445)
[»] chr2 (3 HSPs)
chr2 (124-216)||(1037521-1037613)
chr2 (22-236)||(32785612-32785823)
chr2 (167-213)||(44575459-44575505)
[»] chr5 (5 HSPs)
chr5 (10-71)||(41889556-41889617)
chr5 (10-66)||(41901542-41901598)
chr5 (12-43)||(20478112-20478143)
chr5 (178-216)||(37938092-37938130)
chr5 (177-214)||(41901397-41901434)
[»] chr6 (10 HSPs)
chr6 (177-236)||(9411555-9411614)
chr6 (10-154)||(6402896-6403040)
chr6 (101-214)||(7119284-7119394)
chr6 (101-214)||(7131762-7131872)
chr6 (10-72)||(6432197-6432259)
chr6 (23-69)||(12102315-12102361)
chr6 (22-71)||(6423265-6423314)
chr6 (11-72)||(6589324-6589385)
chr6 (10-67)||(14802372-14802429)
chr6 (11-43)||(10579766-10579798)
[»] chr3 (3 HSPs)
chr3 (180-248)||(51764268-51764336)
chr3 (11-235)||(13470573-13470794)
chr3 (192-246)||(51113611-51113665)
[»] scaffold0807 (1 HSPs)
scaffold0807 (10-71)||(1466-1527)
[»] chr7 (1 HSPs)
chr7 (178-216)||(10614794-10614832)
[»] chr1 (2 HSPs)
chr1 (10-60)||(9586675-9586725)
chr1 (178-235)||(19468340-19468397)
[»] scaffold0295 (1 HSPs)
scaffold0295 (145-202)||(495-552)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 10 - 305
Target Start/End: Complemental strand, 12121520 - 12121225
Alignment:
Q  10 catcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattcggcgcagcttccttcctaaacaactggttaagttcaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12121520 catcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcggcgcagcttccttcctaaacaactggttaagttcaa 12121421  T
Q  110 atgcgtaatctcggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaatg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  12121420 atgcgtaatctcggaacatgtccttaagacttggaaaataccttcttcagatatgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaacg 12121321  T
Q  210 gaagcaatccttttgatgctttcatcttgtaaccatgtactcgaaatcaaatgaagagactttaattgagtactaacaacaaaggaattagaattg 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12121320 gaagcaatccttttgatgctttcatcttgtaaccatgtactcgaaatcaaatggagagactttaattgagtactaacaacaaaggaattagaattg 12121225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 1489417 - 1489155
Alignment:
Q  17 aacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattcggcgcagcttccttcctaaacaactggttaagttcaaatgcgta 116  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||| |||||||| | ||  |||||||||||||| ||    
T  1489417 aacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattccgcacagcttctttcctaaagatcttcttaagttcaaatgccta 1489318  T
Q  117 atctcggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaatggaagcaa 216  Q
    || || ||||||||| |||| || ||||||||||||||||||||| ||||||||||| || |||||| ||||||||||||||||||||||| || |||||    
T  1489317 atatcagaacatgtctttaaaacatggaaaataccttcttcagatatgttatagcaataagtcaaattaagcaattgcaaattggggaaaagggcagcaa 1489218  T
Q  217 tccttttgatgctttcatcttgtaaccatgtactcgaaatcaaatgaagagactttaattgag 279  Q
    || |||  |||||||||||| |||  | || | ||||||||||||| ||||||||||||||||    
T  1489217 tcatttctatgctttcatctcgtattcgtgaattcgaaatcaaatggagagactttaattgag 1489155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 12 - 305
Target Start/End: Complemental strand, 1537828 - 1537535
Alignment:
Q  12 tcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattcggcgcagcttccttcctaaacaactggttaagttcaaat 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||  |||    | | ||||||||||||||    
T  1537828 tcattaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattccatgcagcttccaacctcttaagccggttaagttcaaat 1537729  T
Q  112 gcgtaatctcggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaatgga 211  Q
    || ||| |||||||||||||||||| ||||| |||||||||||||||||| |   | ||||| ||||||||| || |||||||||||| |||||||  ||    
T  1537728 gcctaagctcggaacatgtccttaaaacttgaaaaataccttcttcagatattggaaagcaataactcaaattaaacaattgcaaattcgggaaaactga 1537629  T
Q  212 agcaatccttttgatgctttcatcttgtaaccatgtactcgaaatcaaatgaagagactttaattgagtactaacaacaaaggaattagaattg 305  Q
    ||||||| |||||| ||||| ||||  |||||||  ||||||||||||||| ||||||||||||||||  || ||||  ||||| |||||||||    
T  1537628 agcaatcattttgaagcttttatctcttaaccattgactcgaaatcaaatggagagactttaattgagggctgacaaataaggagttagaattg 1537535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 123 - 301
Target Start/End: Complemental strand, 1505061 - 1504883
Alignment:
Q  123 gaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaatggaagcaatccttt 222  Q
    |||||||||||||| || ||||||||||||||||||||| |||||| |||| |||| |||| || |||||||||||||||||||| |||||||||| |||    
T  1505061 gaacatgtccttaaaacatggaaaataccttcttcagatatgttatggcaataactaaaattaaccaattgcaaattggggaaaacggaagcaatcgttt 1504962  T
Q  223 tgatgctttcatcttgtaaccatgtactcgaaatcaaatgaagagactttaattgagtactaacaacaaaggaattaga 301  Q
     ||||||||||||| |||| |||| | |  |||||||||| ||||||||||||||||  |  |||||||||||||||||    
T  1504961 ggatgctttcatctcgtaaacatggattaaaaatcaaatggagagactttaattgagggcctacaacaaaggaattaga 1504883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 134
Target Start/End: Complemental strand, 1513470 - 1513346
Alignment:
Q  10 catcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattcggcgcagcttccttcctaaacaactggttaagttcaa 109  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| || ||||| | |||||||| |  | |||| ||| ||    
T  1513470 catcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaaagttcattccgcacagctcctttcctaaatagtttgttatgtttaa 1513371  T
Q  110 atgcgtaatctcggaacatgtcctt 134  Q
    |||| ||||||| |||||| |||||    
T  1513370 atgcctaatctcagaacatatcctt 1513346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 1600467 - 1600661
Alignment:
Q  22 ttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattcggcgcagcttccttcctaaacaactggttaagttcaaatgcgtaatctc 121  Q
    |||||||||||||||||||||| || |||||  |||||| |||||||||||  ||||||||| ||  | ||||   || ||||||||||||  |||| |     
T  1600467 ttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggctaagttcaaatgtctaatttt 1600566  T
Q  122 ggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaatggaagcaa 216  Q
     ||| || ||||||| |||||  ||||||||||||||||| |||||  ||||   ||||||||||||| |||||||||||| ||| |||||||||    
T  1600567 agaaaatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgcaaattgggaaaattggaagcaa 1600661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 55908656 - 55908585
Alignment:
Q  145 aaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaatggaagcaa 216  Q
    ||||||||||||||||| |||||| |||  | ||||||||||| ||||||||||||||||||||||||||||    
T  55908656 aaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgcaaattggggaaaatggaagcaa 55908585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 547027 - 547175
Alignment:
Q  88 ctaaacaactggttaagttcaaatgcgtaatctcggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaag 187  Q
    |||||||| ||| ||||||||||||| | ||||   ||||| ||||||| || |   ||||||  ||||||||| |||||   ||| |||| ||||||||    
T  547027 ctaaacaattggataagttcaaatgccttatcttacaacatctccttaaaacatcacaaatactgtcttcagatatgttacgacaataacttaaatcaag 547126  T
Q  188 caattgcaaattggggaaaatggaagcaatccttttgatgctttcatct 236  Q
    || ||||||||||||||| ||||||| || | |||||||||||||||||    
T  547127 cagttgcaaattggggaacatggaaggaaacattttgatgctttcatct 547175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 205
Target Start/End: Complemental strand, 8187063 - 8186959
Alignment:
Q  101 taagttcaaatgcgtaatctcggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattg 200  Q
    ||||||||||| | |||||||  ||||| || | || |||||  ||||||||||||||||| ||| |||||||  ||||||||||||||| |||||||||    
T  8187063 taagttcaaatccctaatctcacaacatctcttcaaaacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcaaattg 8186964  T
Q  201 gggaa 205  Q
    |||||    
T  8186963 gggaa 8186959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 1519203 - 1519143
Alignment:
Q  12 tcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattc 72  Q
    ||||||||  |||||| ||||||||||||||| |||||||||||||||| |||||||||||    
T  1519203 tcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcattc 1519143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 532225 - 532287
Alignment:
Q  10 catcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattc 72  Q
    |||||||||  ||||||||||||||||||||||| ||||| ||||| |||| |||||||||||    
T  532225 catcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcattc 532287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 55505171 - 55505109
Alignment:
Q  10 catcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattc 72  Q
    |||| ||||| ||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||    
T  55505171 catcgtcaacctttgtatatgacaagttcaacacctctagttgggggactctaaagttcattc 55505109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 1508066 - 1508021
Alignment:
Q  10 catcatcaacatttgtatatgacaagttcaacacttctagtttggg 55  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||    
T  1508066 catcatcaacattggtatgtgacaagttcaacacttctagtttggg 1508021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 7307896 - 7307957
Alignment:
Q  10 catcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcatt 71  Q
    |||||||||| | |||||||||||||||||| || || | ||||||||||||||||||||||    
T  7307896 catcatcaacttctgtatatgacaagttcaatacctccaatttgggaactttaaagttcatt 7307957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 8184092 - 8184031
Alignment:
Q  11 atcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattc 72  Q
    |||||||||  |||||| ||||||||||||||| |||||||| ||||||| |||||||||||    
T  8184092 atcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttcattc 8184031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 553515 - 553711
Alignment:
Q  10 catcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattcggcgcagcttccttcctaaacaactggttaagttcaa 109  Q
    ||||||||||  ||||| |||||||||||||||| || |||||| ||||||||||||||| |   || | ||||  || | |||| | ||||||||||||    
T  553515 catcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaagttcaatgtacgtaacttcactcttgaacagcgggttaagttcaa 553614  T
Q  110 atgcgtaatctcggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggggaaa 206  Q
    |||  |||| |   ||||||||||||| || || | || | |||||||||||   |  ||| || | |||||||||||||  |||||||||||||||    
T  553615 atgtctaatgttacaacatgtccttaaaacatgaacaacagcttcttcagatacatcgtaggaatatctcaaatcaagcatctgcaaattggggaaa 553711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 247
Target Start/End: Original strand, 558647 - 558771
Alignment:
Q  123 gaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaatggaagcaatccttt 222  Q
    |||||||||||||| || ||  ||||||||| ||| ||| | ||||  ||| |  ||||||||||||||| |||||| ||||||| |||||||||| |||    
T  558647 gaacatgtccttaaaacatgacaaatacctttttctgatattttatgacaatagatcaaatcaagcaatttcaaattcgggaaaacggaagcaatcgttt 558746  T
Q  223 tgatgctttcatcttgtaaccatgt 247  Q
     ||   ||||||||| |||||||||    
T  558747 ggaccgtttcatcttttaaccatgt 558771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 532354 - 532445
Alignment:
Q  145 aaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaatggaagcaatccttttgatgctttcatct 236  Q
    |||||||||||| |||| ||||||| ||| | ||||| || ||||  || ||||||||||||||||| |||| | || | ||||||||||||    
T  532354 aaataccttctttagatatgttataacaatagctcaagtccagcatatgtaaattggggaaaatggatgcaaacattataatgctttcatct 532445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 659752 - 659795
Alignment:
Q  17 aacatttgtatatgacaagttcaacacttctagtttgggaactt 60  Q
    |||| |||||| ||||||||||||||| ||||||||||||||||    
T  659752 aacacttgtatgtgacaagttcaacacctctagtttgggaactt 659795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 1548487 - 1548428
Alignment:
Q  10 catcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttca 69  Q
    ||||||||| | |||||| ||||||||||||||| || |||||||||| || ||||||||    
T  1548487 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 1548428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 1552830 - 1552771
Alignment:
Q  10 catcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttca 69  Q
    |||||| || |||||||| |||||| ||||||||||| |||||||||| || ||||||||    
T  1552830 catcattaatatttgtatgtgacaaattcaacacttccagtttgggaatttcaaagttca 1552771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 570400 - 570446
Alignment:
Q  23 tgtatatgacaagttcaacacttctagtttgggaactttaaagttca 69  Q
    ||||||||||||||||||||| || |||||| |||||| ||||||||    
T  570400 tgtatatgacaagttcaacacctcgagtttgagaacttcaaagttca 570446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 570727 - 570773
Alignment:
Q  170 gcaaaaactcaaatcaagcaattgcaaattggggaaaatggaagcaa 216  Q
    |||| |||| |||||||| | ||||||||||||||||||||||||||    
T  570727 gcaataacttaaatcaagtagttgcaaattggggaaaatggaagcaa 570773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 1548321 - 1548263
Alignment:
Q  178 tcaaatcaagcaattgcaaattggggaaaatggaagcaatccttttgatgctttcatct 236  Q
    |||||||||||| |||||||||||||||||| |||| ||   |||||||| ||||||||    
T  1548321 tcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatct 1548263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 12116638 - 12116576
Alignment:
Q  10 catcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattc 72  Q
    ||||||||||| |||||| ||||||||||||||| ||||  || ||||| | |||||||||||    
T  12116638 catcatcaacacttgtatgtgacaagttcaacacctctaaatttggaacatcaaagttcattc 12116576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 1545809 - 1545870
Alignment:
Q  10 catcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcatt 71  Q
    ||||||||||  ||||| |  ||||||||||||| || ||||| ||||||||||||||||||    
T  1545809 catcatcaactcttgtaaacaacaagttcaacacctccagtttaggaactttaaagttcatt 1545870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 8187153 - 8187092
Alignment:
Q  11 atcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattc 72  Q
    |||||||||  |||||| ||||||||||||||| || ||||||| || || |||||||||||    
T  8187153 atcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcattc 8187092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 21834276 - 21834208
Alignment:
Q  178 tcaaatcaagcaattgcaaattggggaaaatggaagcaatccttttgatgctttcatcttgtaaccatg 246  Q
    ||||||||||||  || |||||||||||||| ||||||| | || |||| |||||||| | ||||||||    
T  21834276 tcaaatcaagcagctgtaaattggggaaaattgaagcaaacattatgattctttcatcatttaaccatg 21834208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 18315336 - 18315067
Alignment:
Q  10 catcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattcggcgcagcttccttcctaaacaactggttaagttcaa 109  Q
    |||||||||| ||||||| ||||||||||||||| || |||||||||||||||||||||||||  || |||||| ||| | ||  ||  | |||||||||    
T  18315336 catcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcattccacgtagcttcattcttgaatcacgagctaagttcaa 18315237  T
Q  110 atgcgtaatctcggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaatg 209  Q
     ||  ||||||| |||||  | | ||| |||||  ||||||||||||||| | |||||| |||  | |||||||||||||| ||||||||||||||||||    
T  18315236 ctgtctaatctcagaacaacttcgtaaaacttgacaaataccttcttcaggtatgttatcgcagtagctcaaatcaagcaactgcaaattggggaaaatg 18315137  T
Q  210 gaagcaatccttttgatgctttcatcttgtaaccatgtactcgaaatcaaatgaagagactttaattgag 279  Q
    |||| ||   ||||||||||||| |||  |||||||| | |  || | ||| | ||||||||||||||||    
T  18315136 gaagaaaatattttgatgctttcctctcttaaccatgaattgcaagtaaaacggagagactttaattgag 18315067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 227
Target Start/End: Original strand, 32151349 - 32151551
Alignment:
Q  22 ttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattcggcgcagcttccttcctaaacaactggttaagttcaaatgcgtaatctc 121  Q
    ||||| |||||||||| ||||| || || |||| |||||  ||||||||||  |||||||||     |||||| | ||| || ||||||||| |||||||    
T  32151349 ttgtacatgacaagtttaacacctccagattggaaacttcgaagttcattccacgcagcttcacatgtaaacagccggtgaaattcaaatgcctaatctc 32151448  T
Q  122 ggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaatggaagcaatcctt 221  Q
     || |||   ||||| |||||  |||| |||||||||||| |||||| |||| | ||||||||||||| ||||||||| |||||||||||||||| | ||    
T  32151449 agagcat---cttaaaacttgacaaattccttcttcagatatgttatggcaacacctcaaatcaagcagttgcaaattagggaaaatggaagcaaacatt 32151545  T
Q  222 ttgatg 227  Q
    ||||||    
T  32151546 ttgatg 32151551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 27922544 - 27922605
Alignment:
Q  10 catcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcatt 71  Q
    |||||||||||||||||||||||||||||||||| || | ||||||||||| ||||||||||    
T  27922544 catcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttcatt 27922605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 17627952 - 17627897
Alignment:
Q  180 aaatcaagcaattgcaaattggggaaaatggaagcaatccttttgatgctttcatc 235  Q
    |||||||||| |||||||||||||||||||||||||| | |||||||| |||||||    
T  17627952 aaatcaagcagttgcaaattggggaaaatggaagcaaacattttgatgttttcatc 17627897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 21235607 - 21235653
Alignment:
Q  23 tgtatatgacaagttcaacacttctagtttgggaactttaaagttca 69  Q
    ||||||||||||||||||||| || ||||||||||||| ||||||||    
T  21235607 tgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 21235653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 34936225 - 34936164
Alignment:
Q  11 atcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattc 72  Q
    |||||||||  ||||||||||||||| |||||| |||||||| ||||| | |||| ||||||    
T  34936225 atcatcaactcttgtatatgacaagtccaacacctctagttttggaacatcaaagatcattc 34936164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 17636445 - 17636401
Alignment:
Q  29 tgacaagttcaacacttctagtttgggaactttaaagttcattcg 73  Q
    ||||||||||||||| || | ||||||||||| ||||||||||||    
T  17636445 tgacaagttcaacacctccaatttgggaacttcaaagttcattcg 17636401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 1037613 - 1037521
Alignment:
Q  124 aacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaatggaagcaa 216  Q
    ||||| ||||||| ||||   ||||||||||||||||| |||||| |||  | ||||||||||| ||||||||||||||||||||||||||||    
T  1037613 aacatctccttaaaacttcacaaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgcaaattggggaaaatggaagcaa 1037521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 32785823 - 32785612
Alignment:
Q  22 ttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattcggcgcagcttccttcctaaacaactggtt-aagttcaaatgcgtaatct 120  Q
    |||||| ||||||||||||||| |||||||||||| |||||||||||||||| ||  |||   ||| | || || ||||  || ||||||||  ||||||    
T  32785823 ttgtatgtgacaagttcaacacctctagtttgggagctttaaagttcattcgacggtgctcgattcttgaa-aagtggtccaaattcaaatgtctaatct 32785725  T
Q  121 cggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaatggaagcaatcct 220  Q
      ||||||   ||||| | |||  ||||||||||||||||| ||||||||||| | ||||||||||| | |||||||||||  ||||| |||| || | |    
T  32785724 tagaacat---cttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattggaaaaaatagaagaaaacat 32785628  T
Q  221 tttgatgctttcatct 236  Q
      ||||||||||||||    
T  32785627 cctgatgctttcatct 32785612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 44575505 - 44575459
Alignment:
Q  167 atagcaaaaactcaaatcaagcaattgcaaattggggaaaatggaag 213  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||||||    
T  44575505 atagcaaaagctcaaatcaagtaattgcaaattgggaaaaatggaag 44575459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 41889617 - 41889556
Alignment:
Q  10 catcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcatt 71  Q
    |||||||||| ||||||||||| ||||||||||| || | ||||||||||||||||||||||    
T  41889617 catcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatt 41889556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 41901598 - 41901542
Alignment:
Q  10 catcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagt 66  Q
    |||||||||| ||||||||||||||||||||||| || ||||||||||||| |||||    
T  41901598 catcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 43
Target Start/End: Complemental strand, 20478143 - 20478112
Alignment:
Q  12 tcatcaacatttgtatatgacaagttcaacac 43  Q
    ||||||||||||||||||||||||||||||||    
T  20478143 tcatcaacatttgtatatgacaagttcaacac 20478112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 37938092 - 37938130
Alignment:
Q  178 tcaaatcaagcaattgcaaattggggaaaatggaagcaa 216  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  37938092 tcaaatcaagaaattgcagattggggaaaatggaagcaa 37938130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 41901434 - 41901397
Alignment:
Q  177 ctcaaatcaagcaattgcaaattggggaaaatggaagc 214  Q
    |||||||||||||  |||||||||||||||||||||||    
T  41901434 ctcaaatcaagcagctgcaaattggggaaaatggaagc 41901397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 9411555 - 9411614
Alignment:
Q  177 ctcaaatcaagcaattgcaaattggggaaaatggaagcaatccttttgatgctttcatct 236  Q
    |||||||||||||  ||||||||||||||||||||||||| |||||||||| ||| ||||    
T  9411555 ctcaaatcaagcagctgcaaattggggaaaatggaagcaaaccttttgatgtttttatct 9411614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 154
Target Start/End: Original strand, 6402896 - 6403040
Alignment:
Q  10 catcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattcggcgcagcttccttcctaaacaactggttaagttcaa 109  Q
    |||||||||| || |||| ||||||||||||||||||||||| |||||||  |||||| ||||   | ||||||  || | |||| |  |||||||||||    
T  6402896 catcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagtttattccaagtagcttcactcttgaacacccagttaagttcaa 6402995  T
Q  110 atgcgtaatctcggaacatgtccttaagacttggaaaataccttc 154  Q
    |||| |||| |   ||||| ||||||| |||||  ||||||||||    
T  6402996 atgcctaatgttacaacatctccttaaaacttgacaaataccttc 6403040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 214
Target Start/End: Original strand, 7119284 - 7119394
Alignment:
Q  101 taagttcaaatgcgtaatctcggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattg 200  Q
    ||||||||||||  ||||||  |||||| ||||||| |||||  ||||||||||   |||| |||||| ||||  | |||||||||| | ||| ||||||    
T  7119284 taagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttc---agatatgttattgcaagtattcaaatcaagaagttgtaaattg 7119380  T
Q  201 gggaaaatggaagc 214  Q
    ||||||| ||||||    
T  7119381 gggaaaaaggaagc 7119394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 214
Target Start/End: Original strand, 7131762 - 7131872
Alignment:
Q  101 taagttcaaatgcgtaatctcggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattg 200  Q
    ||||||||||||  ||||||  |||||| ||||||| |||||  ||||||||||   |||| |||||| ||||  | |||||||||| | ||| ||||||    
T  7131762 taagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttc---agatatgttattgcaagtattcaaatcaagaagttgtaaattg 7131858  T
Q  201 gggaaaatggaagc 214  Q
    ||||||| ||||||    
T  7131859 gggaaaaaggaagc 7131872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 6432197 - 6432259
Alignment:
Q  10 catcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattc 72  Q
    ||||||||||  |||||| ||||||||||||||| |  || |||||||||| |||||||||||    
T  6432197 catcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcattc 6432259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 12102315 - 12102361
Alignment:
Q  23 tgtatatgacaagttcaacacttctagtttgggaactttaaagttca 69  Q
    ||||| ||||||||||||||| || ||||||||||||| ||||||||    
T  12102315 tgtatgtgacaagttcaacacctccagtttgggaacttcaaagttca 12102361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 6423265 - 6423314
Alignment:
Q  22 ttgtatatgacaagttcaacacttctagtttgggaactttaaagttcatt 71  Q
    |||||| ||||||||||||||| || || |||||||||| ||||||||||    
T  6423265 ttgtatttgacaagttcaacacctccagcttgggaacttaaaagttcatt 6423314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 6589385 - 6589324
Alignment:
Q  11 atcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattc 72  Q
    ||||| ||||||||||| ||||||||||||||| || ||  ||||||||  |||||||||||    
T  6589385 atcattaacatttgtatttgacaagttcaacacctccagcatgggaactacaaagttcattc 6589324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 14802372 - 14802429
Alignment:
Q  10 catcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagtt 67  Q
    |||||||||| ||||||| |||||| ||||||||||| |  |||||||||| ||||||    
T  14802372 catcatcaacctttgtatttgacaaattcaacacttccatcttgggaacttcaaagtt 14802429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 10579798 - 10579766
Alignment:
Q  11 atcatcaacatttgtatatgacaagttcaacac 43  Q
    ||||||||| |||||||||||||||||||||||    
T  10579798 atcatcaacttttgtatatgacaagttcaacac 10579766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 51764336 - 51764268
Alignment:
Q  180 aaatcaagcaattgcaaattggggaaaatggaagcaatccttttgatgctttcatcttgtaaccatgta 248  Q
    ||||||||||  ||||||||||||||||||||||||| | || |||||||||||||   ||||||||||    
T  51764336 aaatcaagcagctgcaaattggggaaaatggaagcaaacattatgatgctttcatcacttaaccatgta 51764268  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 13470794 - 13470573
Alignment:
Q  11 atcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattcggcgcagcttccttcctaaacaactggttaagttcaaa 110  Q
    ||||| ||| ||||||| ||||||||||||||| || || ||||||||   |||||||||||   | ||||||  |  |  ||||  || ||||||||||    
T  13470794 atcattaacctttgtatttgacaagttcaacacctccagattgggaacaacaaagttcattccaagtagcttcacttttttacaataggctaagttcaaa 13470695  T
Q  111 tgcgtaatctcggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaatgg 210  Q
    ||| ||||||   ||||| ||||||| |||||  ||||||||| |   |||  |  || |||| || ||||||||||||  ||||||||||||||| |||    
T  13470694 tgcctaatcttacaacatatccttaaaacttgacaaatacctttt---gataagagattgcaacaattcaaatcaagcagctgcaaattggggaaattgg 13470598  T
Q  211 aagcaatccttttgatgctttcatc 235  Q
    |||||| | || |||||| ||||||    
T  13470597 aagcaaacattatgatgccttcatc 13470573  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 51113665 - 51113611
Alignment:
Q  192 tgcaaattggggaaaatggaagcaatccttttgatgctttcatcttgtaaccatg 246  Q
    |||| |||||||||||||||||||||| || ||||||| ||||||  ||||||||    
T  51113665 tgcagattggggaaaatggaagcaatcattatgatgctctcatctcttaaccatg 51113611  T

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Target: scaffold0807 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 1527 - 1466
Alignment:
Q  10 catcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcatt 71  Q
    |||||||||||||||||| |||||||| |||||| ||||| || ||||||  ||||||||||    
T  1527 catcatcaacatttgtatttgacaagtccaacacctctagcttaggaactacaaagttcatt 1466  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 10614794 - 10614832
Alignment:
Q  178 tcaaatcaagcaattgcaaattggggaaaatggaagcaa 216  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  10614794 tcaaatcaagcagttgcaaattggggaaattggaagcaa 10614832  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 9586675 - 9586725
Alignment:
Q  10 catcatcaacatttgtatatgacaagttcaacacttctagtttgggaactt 60  Q
    |||||| ||||| ||||||||||||||||||||| ||||| ||||| ||||    
T  9586675 catcattaacatctgtatatgacaagttcaacacctctagcttggggactt 9586725  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 19468397 - 19468340
Alignment:
Q  178 tcaaatcaagcaattgcaaattggggaaaatggaagcaatccttttgatgctttcatc 235  Q
    ||||||||||||  ||||||||||| ||||||||||||| | || ||||| |||||||    
T  19468397 tcaaatcaagcagctgcaaattgggaaaaatggaagcaaacattatgatgttttcatc 19468340  T

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Target: scaffold0295 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 552 - 495
Alignment:
Q  145 aaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggg 202  Q
    ||||||||||||||||| |||||| |||  | ||||||||||| ||||| ||||||||    
T  552 aaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgtaaattggg 495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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