View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_high_57 (Length: 255)
Name: NF13955_high_57
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_high_57 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 31475326 - 31475082
Alignment:
| Q |
1 |
ccttcatgaaactgcgaagttcatggtaagtgctgggtttgaggaagagttttctaatgtatacatcaattgtagaaggaaatgtttggaggagggtcta |
100 |
Q |
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| T |
31475326 |
ccttcatgaaaccgcgaagttcatggtaagtgctgggtttgaggaagagttttctaatgtatacatcaattgtagaaggaaatgtttggaggagtgtcta |
31475227 |
T |
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| Q |
101 |
ataaatagattattcggcttgcagaagattaaaatcaggaatgaaaatcaaagggtgaaatatgtagataatgtgattaaaaagtggatcacagcatcag |
200 |
Q |
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|||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31475226 |
ataaatagattattcggcttgcagcagattaacatcatgaatgaaaatcaaagggtgaaatatgtagataatgtgattaaaaagtggatcacagcatcag |
31475127 |
T |
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| Q |
201 |
aaatctctctgaagattctatttccatttgaacaacgactctgtg |
245 |
Q |
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| T |
31475126 |
aaatctctctgaagattctatttccatttgaacaacgactctgtg |
31475082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 40842702 - 40842642
Alignment:
| Q |
185 |
tggatcacagcatcagaaatctctctgaagattctatttccatttgaacaacgactctgtg |
245 |
Q |
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| T |
40842702 |
tggatcacagcatcagaaatcgctcttaagattctatttccatttgaacaacgactctgtg |
40842642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 6037157 - 6036923
Alignment:
| Q |
1 |
ccttcatgaaactgcgaagttcatggtaagtgctgggtttgaggaagagttttctaatgtatacatcaattgtagaaggaaatgtttggaggagggtcta |
100 |
Q |
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|||||||||||| | ||||| ||||| || ||||| ||||||||||||||||||| |||||| | | ||||||||| |||||||||||||||| || || |
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| T |
6037157 |
ccttcatgaaaccacaaagttgatggtgagggctggatttgaggaagagttttcta-tgtatataccgattgtagaaagaaatgtttggaggagtgtata |
6037059 |
T |
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| Q |
101 |
ataaatagattattcggcttgcagaagattaaaatcaggaatgaaaatcaaagggtgaaatatgtagataatgtgattaaaaagtggatcacagcatcag |
200 |
Q |
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||||||||||||||| ||| |||||||||||| |||| || |||| |||||| |||||||||| |||||| |||||||||| ||||||| | |||||| |
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| T |
6037058 |
ataaatagattattcagctggcagaagattaacatcaagattgaacatcaaaaggtgaaatatctagataccgtgattaaaagatggatcaaatcatcag |
6036959 |
T |
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| Q |
201 |
aaatctctctgaagattctatttccatttgaacaacg |
237 |
Q |
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| T |
6036958 |
atatctctctcaa-attttatttccatccgaacaacg |
6036923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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