View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_high_62 (Length: 243)
Name: NF13955_high_62
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_high_62 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 353133 - 353342
Alignment:
| Q |
12 |
ttatactactatcatgtgtgcacttgcaaaggcagagaaatttgacgaagctttacaaattgtcgaaagaatgaatgctgttgggtgtagacctgataca |
111 |
Q |
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| T |
353133 |
ttatactactatcatgtgtgcacttgcaaaggcagagaaatttgatgaagctttacaagttgtcgaaagaatgaatgctgttgggtgtagacctgataca |
353232 |
T |
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| Q |
112 |
cnnnnnnncaattcgttcatttatacgatggggagagcaggcagaatagatgatgctacacatatattcaaggttgcgatgccgaaggccagtgtggccc |
211 |
Q |
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| T |
353233 |
ctttttttcaattcgttcatttatacgatggggagagcaggcagaatagatgatgctacacatatattcaaggttgcgatgccgaaggccagtgtggccc |
353332 |
T |
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| Q |
212 |
caaatacatc |
221 |
Q |
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|||||||||| |
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| T |
353333 |
caaatacatc |
353342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 10579914 - 10580122
Alignment:
| Q |
13 |
tatactactatcatgtgtgcacttgcaaaggcagagaaatttgacgaagctttacaaattgtcgaaagaatgaatgctgttgggtgtagacctgatacac |
112 |
Q |
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||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| | |
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| T |
10579914 |
tatactactataatgtgcgcactcgcaaaagcagagaaatttgacgaagctttacaagttgtcgaaagaatgaatgctgttggatgtaggcctgatacgc |
10580013 |
T |
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| Q |
113 |
nnnnnnncaattcgttcatttatacgatggggagagcaggcagaatagatgatgctacacatatattcaaggttgcgatgccgaaggccagtgtggcccc |
212 |
Q |
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| T |
10580014 |
tctttttcaattcgttcatttatacgttggggagagcaggcagaatagatgatgctacatatgtattcaaggttgcgatgccgaaggccaatgtggcccc |
10580113 |
T |
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| Q |
213 |
aaatacatc |
221 |
Q |
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||||||||| |
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| T |
10580114 |
aaatacatc |
10580122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 24578321 - 24578529
Alignment:
| Q |
13 |
tatactactatcatgtgtgcacttgcaaaggcagagaaatttgacgaagctttacaaattgtcgaaagaatgaatgctgttgggtgtagacctgatacac |
112 |
Q |
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||||||||||| ||||| ||||| ||||| ||||| |||||||| |||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
24578321 |
tatactactataatgtgcgcactcgcaaaagcagaaaaatttgaagaagctttacaagttgtcgaaagaatgaatgctgttggatgtaggcctgatacac |
24578420 |
T |
|
| Q |
113 |
nnnnnnncaattcgttcatttatacgatggggagagcaggcagaatagatgatgctacacatatattcaaggttgcgatgccgaaggccagtgtggcccc |
212 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24578421 |
tctttttcaattcgctcatttatacattggggagagcaggcagaatagatgatgctacacatgtattcaaggttgcgatgccgaaggccagtgtggcccc |
24578520 |
T |
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| Q |
213 |
aaatacatc |
221 |
Q |
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||||||||| |
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| T |
24578521 |
aaatacatc |
24578529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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