View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_high_64 (Length: 239)
Name: NF13955_high_64
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_high_64 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 31475315 - 31475536
Alignment:
| Q |
2 |
gtttcatgaaggtagttgattaaatctgaaggcaactcatcgatcatgaaattagggccgggcaacataatttcagagtcatcatattcattcacatgct |
101 |
Q |
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| T |
31475315 |
gtttcatgaaggtagttgattaaatctgaaggcaactcatcgatcatgaaattaaggctgggcaacataatttcagagtcatcatattcattcacatgct |
31475414 |
T |
|
| Q |
102 |
tcagaagcatgtcgacgaggttcagatttttctgctgtagcaagttaagataattttttagttgttcaatcgtactagcaatatcagtcttagctagatg |
201 |
Q |
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||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31475415 |
tcaaaagcatgtcaacgaggttcagatttttctgctgtagcaagttaagataattttttagttgttcaatcgtactagcaatatcagcgttagctagatg |
31475514 |
T |
|
| Q |
202 |
tggcgaatctacatcaataatt |
223 |
Q |
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|||||||||||||||||||||| |
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| T |
31475515 |
tggcgaatctacatcaataatt |
31475536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 40842705 - 40842918
Alignment:
| Q |
10 |
aaggtagttgattaaatctgaaggcaactcatcgatcatgaaattagggccgggcaacataatttcagagtcatcatattcattcacatgcttcagaagc |
109 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||| |||||||||| |||| |
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| T |
40842705 |
aaggtagttgatcaaatctggaggcaactcatcgatcatgaagttagggccgggcaacatcaattcagagtcatcatattcattgacatgcttcaaaagc |
40842804 |
T |
|
| Q |
110 |
atgtcgacgaggttcagatttttctgctgtagcaagttaagataattttttagttgttcaatcgtactagcaatatcagtcttagctagatgtggcgaat |
209 |
Q |
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|||||||| ||||||| ||||||||| || |||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |
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| T |
40842805 |
atgtcgacaaggttcaaatttttctgatgaagcatgttaagataattttttagttgttccatcgtactagcaatatcagtattagctagttgtggcgaat |
40842904 |
T |
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| Q |
210 |
ctacatcaataatt |
223 |
Q |
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|||| ||||||||| |
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| T |
40842905 |
ctacttcaataatt |
40842918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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