View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13955_high_66 (Length: 233)

Name: NF13955_high_66
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13955_high_66
NF13955_high_66
[»] chr6 (19 HSPs)
chr6 (17-215)||(27604341-27604539)
chr6 (26-215)||(26802804-26802988)
chr6 (26-215)||(27592658-27592845)
chr6 (26-215)||(27679308-27679495)
chr6 (26-215)||(27677257-27677439)
chr6 (108-215)||(28786677-28786783)
chr6 (108-215)||(28792798-28792904)
chr6 (108-206)||(27427260-27427356)
chr6 (26-215)||(27706041-27706227)
chr6 (117-215)||(28781549-28781646)
chr6 (138-214)||(27698224-27698298)
chr6 (123-181)||(26646932-26646990)
chr6 (123-181)||(26752900-26752958)
chr6 (124-181)||(26143322-26143379)
chr6 (123-181)||(25483512-25483570)
chr6 (123-181)||(26056375-26056433)
chr6 (123-181)||(26076345-26076403)
chr6 (26-68)||(27530983-27531025)
chr6 (124-181)||(25538997-25539054)
[»] scaffold0003 (1 HSPs)
scaffold0003 (108-206)||(60007-60103)
[»] chr4 (6 HSPs)
chr4 (108-206)||(18074199-18074295)
chr4 (112-215)||(18655110-18655211)
chr4 (112-215)||(18723718-18723819)
chr4 (118-215)||(18731137-18731232)
chr4 (119-215)||(18699033-18699127)
chr4 (112-215)||(18679193-18679301)
[»] scaffold0419 (1 HSPs)
scaffold0419 (117-215)||(7935-8032)
[»] scaffold0277 (2 HSPs)
scaffold0277 (117-215)||(13312-13409)
scaffold0277 (108-215)||(4349-4457)
[»] chr1 (3 HSPs)
chr1 (108-187)||(268015-268094)
chr1 (117-182)||(28127332-28127397)
chr1 (117-166)||(28164048-28164097)


Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 27604539 - 27604341
Alignment:
Q  17 actacatatatcctatttttcccttttgtattttctttattcaatttcaattacccaataatctcatattcaaggttaaatgagatcaaatacctttttc 116  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27604539 actacataaatcctatttttcccttttgtattttctttattcaatttcaattacccaataatctcatattcaaggttaaatgagatcaaatacctttttt 27604440  T
Q  117 atttacgtttttaaacaagttttagttatttatatgtcaaaatagttagaaatgtataatatattttgagtgtacatggatttgattgtgatgttgtta 215  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||    
T  27604439 atttacgtttttaaacaagtattagttatttatatgtcaaaatagttagaaatgtataatatattctgagtgtacatggatgtgattatgatgttgtta 27604341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 26 - 215
Target Start/End: Original strand, 26802804 - 26802988
Alignment:
Q  26 atcctatttttcccttttgtattttctttattcaatttcaattacccaataatctcatattcaaggttaaatgagatcaaatacctttttcatttacgtt 125  Q
    |||||||||||||||||| |||||| ||| ||||| ||||||| |||||||||||||| || ||||||||||| ||   ||||||||| | || ||||||    
T  26802804 atcctatttttcccttttatattttatttcttcaacttcaatttcccaataatctcatcttaaaggttaaatggga---aatacctttcttatatacgtt 26802900  T
Q  126 tttaaacaagttttagttatttatatgtcaaaatagttagaaatgtataatatattttgagtgtacatggatttgattgtgatgttgtta 215  Q
    ||||||||||| ||||||||||||||||  |||||||||||||||||||||||||| |||  |||||||||| |||||||||||||||||    
T  26802901 tttaaacaagtattagttatttatatgttgaaatagttagaaatgtataatatattatga--gtacatggatgtgattgtgatgttgtta 26802988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 215
Target Start/End: Complemental strand, 27592845 - 27592658
Alignment:
Q  26 atcctatttttcccttttgtattttctttattcaatttcaattacccaataatctcatattcaaggttaaatgagatcaaatacctttttcatttacgtt 125  Q
    |||||||||||||||||| |||||| ||| ||||| |||||||   |||||||||||| || ||||||||| | ||   ||||||||||| || |||  |    
T  27592845 atcctatttttcccttttctattttatttcttcaacttcaattttacaataatctcatcttaaaggttaaaaggga---aataccttttttatatacagt 27592749  T
Q  126 tttaaacaagtt---ttagttatttatatgtcaaaatagttagaaatgtataatatattttgagtgtacatggatttgattgtgatgttgtta 215  Q
    |||||||||||    ||||||||||||||||| |||||||||||||||||||||| ||| | |  |||||||||| |||||||||||||||||    
T  27592748 tttaaacaagtactattagttatttatatgtcgaaatagttagaaatgtataatacattctta--gtacatggatgtgattgtgatgttgtta 27592658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 215
Target Start/End: Original strand, 27679308 - 27679495
Alignment:
Q  26 atcctatttttcccttttgtattttctttattcaatttcaattacccaataatctcatattcaaggttaaatgagatcaaatacctttttcatttacgtt 125  Q
    |||||||||||||||||| |||||| ||| ||||| |||||||   |||||||||||| || ||||||||| | ||   ||||||||||| || |||  |    
T  27679308 atcctatttttcccttttctattttatttcttcaacttcaattttacaataatctcatcttaaaggttaaaaggga---aataccttttttatatacagt 27679404  T
Q  126 tttaaacaagtt---ttagttatttatatgtcaaaatagttagaaatgtataatatattttgagtgtacatggatttgattgtgatgttgtta 215  Q
    |||||||||||    ||||||||||||||||| |||||||||||||||||||||| ||| | |  |||||||||| |||||||||||||||||    
T  27679405 tttaaacaagtactattagttatttatatgtcgaaatagttagaaatgtataatacattctta--gtacatggatgtgattgtgatgttgtta 27679495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 215
Target Start/End: Complemental strand, 27677439 - 27677257
Alignment:
Q  26 atcctatttttcccttttgtattttctttattcaatttcaattacccaataatctcatattcaaggttaaatgagatcaaatacctttttcatttac-gt 124  Q
    |||||||||||||||||| |||||| ||| ||||| ||||||| | |||||||||||| || ||||||||| | |   |||||||||||| || ||| ||    
T  27677439 atcctatttttcccttttctattttatttcttcaacttcaatttcacaataatctcatcttaaaggttaaaaggg---aaataccttttttatatacagt 27677343  T
Q  125 ttttaaacaagttttagttatttatatgtcaaaatagttagaaatgtataatatattttgagtgtacatggatttgattgtgatgttgtta 215  Q
    ||| |||  | | ||||||||||||||||| |||||||||||||||||||||| |||      |||||||||| |||||||||||||||||    
T  27677342 tttaaaagtactattagttatttatatgtcgaaatagttagaaatgtataatacatt-----agtacatggatgtgattgtgatgttgtta 27677257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 108 - 215
Target Start/End: Original strand, 28786677 - 28786783
Alignment:
Q  108 acctttttcatttacgtttttaaacaagt-tttagttatttatatgtcaaaatagttagaaatgtataatatattttgagtgtacatggatttgattgtg 206  Q
    |||||||  |||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||| |||||| |||  |||||||||| ||||||||    
T  28786677 accttttctatttacgtttttaaacaagtatttaattatttttatgtcaaaatagttagaaatgtatactatattctga--gtacatggatgtgattgtg 28786774  T
Q  207 atgttgtta 215  Q
    |||||||||    
T  28786775 atgttgtta 28786783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 108 - 215
Target Start/End: Original strand, 28792798 - 28792904
Alignment:
Q  108 acctttttcatttacgtttttaaacaagt-tttagttatttatatgtcaaaatagttagaaatgtataatatattttgagtgtacatggatttgattgtg 206  Q
    |||||||  |||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||| |||||| |||  |||||||||| ||||||||    
T  28792798 accttttctatttacgtttttaaacaagtatttaattatttttatgtcaaaatagttagaaatgtatactatattctga--gtacatggatgtgattgtg 28792895  T
Q  207 atgttgtta 215  Q
    |||||||||    
T  28792896 atgttgtta 28792904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 206
Target Start/End: Complemental strand, 27427356 - 27427260
Alignment:
Q  108 acctttttcatttacgtttttaaacaagttttagttatttatatgtcaaaatagttagaaatgtataatatattttgagtgtacatggatttgattgtg 206  Q
    |||||||| ||||| |||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| |||  |||||||||| ||||||||    
T  27427356 accttttttatttatgtttttaaacaattgttagttatttatatgtcaaaatagttaaaaatgtataatatattatga--gtacatggatgtgattgtg 27427260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 26 - 215
Target Start/End: Complemental strand, 27706227 - 27706041
Alignment:
Q  26 atcctatttttcccttttgtattttctttattcaatttcaattacccaataatctcatattcaaggttaaatgagatcaaatacctttttcatttacgtt 125  Q
    |||||||||||||||||| |||||| ||| ||||| ||||||| | |||||||||||| || ||| ||||| |     |||||||||||| || |||  |    
T  27706227 atcctatttttcccttttctattttatttcttcaacttcaatttcacaataatctcatcttaaagtttaaaggg----aaataccttttttatatacagt 27706132  T
Q  126 tttaaacaagtt---ttagttatttatatgtcaaaatagttagaaatgtataatatattttgagtgtacatggatttgattgtgatgttgtta 215  Q
    |||||||||||    ||||||||||||||||| ||||||||||||||| |||||| ||| | |  |||||||||| |||||| ||||||||||    
T  27706131 tttaaacaagtactattagttatttatatgtcgaaatagttagaaatgaataatacattctta--gtacatggatgtgattgggatgttgtta 27706041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 28781549 - 28781646
Alignment:
Q  117 atttacgtttttaaacaagt-tttagttatttatatgtcaaaatagttagaaatgtataatatattttgagtgtacatggatttgattgtgatgttgtta 215  Q
    |||||||||||||||||| | |||| |||||| |||||||||||||||||||||||||| |||||| |||  |||||||||| |||||||||||||||||    
T  28781549 atttacgtttttaaacaattatttaattatttttatgtcaaaatagttagaaatgtatactatattctga--gtacatggatgtgattgtgatgttgtta 28781646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 27698298 - 27698224
Alignment:
Q  138 ttagttatttatatgtcaaaatagttagaaatgtataatatattttgagtgtacatggatttgattgtgatgttgtt 214  Q
    ||||||||||||||||| |||||||||||||| ||||||||||| |||  |||||| ||| ||||||||||||||||    
T  27698298 ttagttatttatatgtcgaaatagttagaaatttataatatattctga--gtacatagatgtgattgtgatgttgtt 27698224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 26646932 - 26646990
Alignment:
Q  123 gtttttaaacaagttttagttatttatatgtcaaaatagttagaaatgtataatatatt 181  Q
    |||||||||||||| | | ||||||||||||||||| |||||||| |||||||||||||    
T  26646932 gtttttaaacaagtataaattatttatatgtcaaaagagttagaactgtataatatatt 26646990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 26752900 - 26752958
Alignment:
Q  123 gtttttaaacaagttttagttatttatatgtcaaaatagttagaaatgtataatatatt 181  Q
    |||||||||||||| | | ||||||||||||||||| |||||||| |||||||||||||    
T  26752900 gtttttaaacaagtataaattatttatatgtcaaaagagttagaactgtataatatatt 26752958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 26143322 - 26143379
Alignment:
Q  124 tttttaaacaagttttagttatttatatgtcaaaatagttagaaatgtataatatatt 181  Q
    |||| |||||||| | ||||||||||||||||||| |||||||| || ||||||||||    
T  26143322 ttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaattgcataatatatt 26143379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 25483512 - 25483570
Alignment:
Q  123 gtttttaaacaagttttagttatttatatgtcaaaatagttagaaatgtataatatatt 181  Q
    ||||| |||||||| | ||||||||||||||||||| |||||||| || || |||||||    
T  25483512 gttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaattgcatgatatatt 25483570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 26056375 - 26056433
Alignment:
Q  123 gtttttaaacaagttttagttatttatatgtcaaaatagttagaaatgtataatatatt 181  Q
    ||||| |||| ||| | ||||||||||||||||||| |||||||| || ||||||||||    
T  26056375 gttttaaaactagtgtaagttatttatatgtcaaaaaagttagaattgcataatatatt 26056433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 26076345 - 26076403
Alignment:
Q  123 gtttttaaacaagttttagttatttatatgtcaaaatagttagaaatgtataatatatt 181  Q
    ||||| |||| ||| | ||||||||||||||||||| |||||||| || ||||||||||    
T  26076345 gttttaaaactagtgtaagttatttatatgtcaaaaaagttagaattgcataatatatt 26076403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 27531025 - 27530983
Alignment:
Q  26 atcctatttttcccttttgtattttctttattcaatttcaatt 68  Q
    |||||||||||||||||| |||||||||| || ||||||||||    
T  27531025 atcctatttttcccttttatattttctttctttaatttcaatt 27530983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 25538997 - 25539054
Alignment:
Q  124 tttttaaacaagttttagttatttatatgtcaaaatagttagaaatgtataatatatt 181  Q
    |||| |||||||| | ||||||||||||||||||| | |||||| || ||||||||||    
T  25538997 ttttaaaacaagtgtaagttatttatatgtcaaaaaaattagaattgcataatatatt 25539054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 206
Target Start/End: Original strand, 60007 - 60103
Alignment:
Q  108 acctttttcatttacgtttttaaacaagttttagttatttatatgtcaaaatagttagaaatgtataatatattttgagtgtacatggatttgattgtg 206  Q
    |||||||| ||||| |||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| |||  |||||||||| ||||||||    
T  60007 accttttttatttatgtttttaaacaattgttagttatttatatgtcaaaatagttaaaaatgtataatatattatga--gtacatggatgtgattgtg 60103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 206
Target Start/End: Original strand, 18074199 - 18074295
Alignment:
Q  108 acctttttcatttacgtttttaaacaagttttagttatttatatgtcaaaatagttagaaatgtataatatattttgagtgtacatggatttgattgtg 206  Q
    |||||||| ||||| |||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| |||  |||||||||| ||||||||    
T  18074199 accttttttatttatgtttttaaacaattgttagttatttatatgtcaaaatagttaaaaatgtataatatattatga--gtacatggatgtgattgtg 18074295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 112 - 215
Target Start/End: Complemental strand, 18655211 - 18655110
Alignment:
Q  112 ttttcatttacgtttttaaacaagttttagttatttatatgtcaaaatagttagaaatgtataatatattttgagtgtacatggatttgattgtgatgtt 211  Q
    |||| |||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||| |||  ||| |||||| ||| |||||||||    
T  18655211 tttttatttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatgatatattatga--gtaaatggatgtgactgtgatgtt 18655114  T
Q  212 gtta 215  Q
    ||||    
T  18655113 gtta 18655110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 112 - 215
Target Start/End: Complemental strand, 18723819 - 18723718
Alignment:
Q  112 ttttcatttacgtttttaaacaagttttagttatttatatgtcaaaatagttagaaatgtataatatattttgagtgtacatggatttgattgtgatgtt 211  Q
    |||| |||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||| |||  ||| |||||| ||| |||||||||    
T  18723819 tttttatttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatgatatattatga--gtaaatggatgtgactgtgatgtt 18723722  T
Q  212 gtta 215  Q
    ||||    
T  18723721 gtta 18723718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 18731232 - 18731137
Alignment:
Q  118 tttacgtttttaaacaagttttagttatttatatgtcaaaatagttagaaatgtataatatattttgagtgtacatggatttgattgtgatgttgtta 215  Q
    ||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||| |||  | |||||||| ||| |||||||||||||    
T  18731232 tttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatgatatattatga--ggacatggatgtgactgtgatgttgtta 18731137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 215
Target Start/End: Complemental strand, 18699127 - 18699033
Alignment:
Q  119 ttacgtttttaaacaagttttagttatttatatgtcaaaatagttagaaatgtataatatattttgagtgtacatggatttgattgtgatgttgtta 215  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||| | |||  | |||||||| ||| |||||||||||||    
T  18699127 ttacgtttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatgatatactatga--ggacatggatgtgactgtgatgttgtta 18699033  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 215
Target Start/End: Complemental strand, 18679301 - 18679193
Alignment:
Q  112 ttttcatttacgtttttaaacaagttttagttatttatatgtcaaaatag-------ttagaaatgtataatatattttgagtgtacatggatttgattg 204  Q
    |||| |||||||||||||||||||| ||||||||||||| ||||||||||       |||||||||||| ||||||| |||  |||||||| | ||| ||    
T  18679301 tttttatttacgtttttaaacaagtattagttatttataagtcaaaatagtttgaatttagaaatgtatgatatattatga--gtacatgggtgtgactg 18679204  T
Q  205 tgatgttgtta 215  Q
    |||||||||||    
T  18679203 tgatgttgtta 18679193  T

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Target: scaffold0419 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 7935 - 8032
Alignment:
Q  117 atttacgtttttaaacaagt-tttagttatttatatgtcaaaatagttagaaatgtataatatattttgagtgtacatggatttgattgtgatgttgtta 215  Q
    |||||||||||||||||||| |||| ||| || |||||||||||||||||||||||||| |||||| |||  |||||||||| |||||||||||||||||    
T  7935 atttacgtttttaaacaagtatttaattacttttatgtcaaaatagttagaaatgtatactatattctga--gtacatggatgtgattgtgatgttgtta 8032  T

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Target: scaffold0277 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 13409 - 13312
Alignment:
Q  117 atttacgtttttaaacaagt-tttagttatttatatgtcaaaatagttagaaatgtataatatattttgagtgtacatggatttgattgtgatgttgtta 215  Q
    |||||||||||||||||||| |||| ||| || |||||||||||||||||||||||||| |||||| |||  |||||||||| |||||||||||||||||    
T  13409 atttacgtttttaaacaagtatttaattacttttatgtcaaaatagttagaaatgtatactatattctga--gtacatggatgtgattgtgatgttgtta 13312  T

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Target: scaffold0277; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 215
Target Start/End: Complemental strand, 4457 - 4349
Alignment:
Q  108 acctttttcatttacgtttttaaacaagt-tttagttatttatatgtcaaaatagttagaaatgtataatatattttgagtgtacatggatttgattgtg 206  Q
    |||||||  |||||||||||||||||||| |||| ||| || ||||||| ||||||||||||||||||  |||| ||  | |||||||||| ||||||||    
T  4457 accttttatatttacgtttttaaacaagtatttaattacttttatgtcacaatagttagaaatgtataccatatattatgagtacatggatgtgattgtg 4358  T
Q  207 atgttgtta 215  Q
    |||||||||    
T  4357 atgttgtta 4349  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 268094 - 268015
Alignment:
Q  108 acctttttcatttacgtttttaaacaagttttagttatttatatgtcaaaatagttagaaatgtataatatattttgagt 187  Q
    |||||||| |||||||||| |||| |||| |||||| |||||||| | ||||||||||||| ||||||||||||||||||    
T  268094 accttttttatttacgtttctaaataagtattagttgtttatatgacgaaatagttagaaacgtataatatattttgagt 268015  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 28127397 - 28127332
Alignment:
Q  117 atttacgtttttaaacaagttttagttatttatatgtcaaaatagttagaaatgtataatatattt 182  Q
    ||||| |||||||||||||| | || |||||||||||||||||||| |||  |||||||| |||||    
T  28127397 atttatgtttttaaacaagtataaggtatttatatgtcaaaatagtcagagttgtataatgtattt 28127332  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 28164097 - 28164048
Alignment:
Q  117 atttacgtttttaaacaagttttagttatttatatgtcaaaatagttaga 166  Q
    ||||| |||||||||||||| | || ||||||||||||||||||||||||    
T  28164097 atttatgtttttaaacaagtataagatatttatatgtcaaaatagttaga 28164048  T

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