View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_high_7 (Length: 614)
Name: NF13955_high_7
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 31273916 - 31273522
Alignment:
| Q |
1 |
tatgcgggaaactacaagttatacctgcttacaaaatcgcaaagtatttttctcatttaatttttagcctttaggagatgcatttttcatctttgaaagc |
100 |
Q |
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| T |
31273916 |
tatgcgggaaactacaagttatacctgcttacaaagttgcaaggtatttttctcatttaatttttagtctttaggagatgcatttttcatctttgaaagc |
31273817 |
T |
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| Q |
101 |
ttgtacaaaaagagaagagtcgcactaaagtcaaattttacgtcaacctttggcaaagacattttcaatagccaccatagcagcttcataggtagtagca |
200 |
Q |
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| T |
31273816 |
ttgtacaaaaagagaagagtcgcactaaagtcaaattttacgtcaacctttggcaaagacattttcaatagccaccatagcagcttcataggtagtagca |
31273717 |
T |
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| Q |
201 |
gatttgataaaagcaacaaaacacccagcaatcacaattatgattttttccaatccacatgaatagtagtaaagcagaagaagnnnnnnnnnnnnnnnnn |
300 |
Q |
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| T |
31273716 |
gattcgataaaagcaacaaaacacccagcaatcacaattatgat-ttttccaatccacatgaatagtagtaaagcagaagaagaaaaacaaaaattccaa |
31273618 |
T |
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| Q |
301 |
nnnnnngctaacaaaagtgtgtgctctttatctaaatgaacgggacggttagttagtcgattagttagttaggttgtttgaatcagattaaaccga |
396 |
Q |
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| T |
31273617 |
aaaaaggctaacaaaagtgtgtgctctttatctaaatgaacgggacggttagttagtcgattagttagttaggttgtttgaatcagattaaaccga |
31273522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 421 - 605
Target Start/End: Complemental strand, 31273518 - 31273319
Alignment:
| Q |
421 |
gttagtttgttctcaattatttataatttttatttatttgcttaattgtcatttggtttagttgtggtttaatcaattgaaccatgatctaaaattttca |
520 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31273518 |
gttagtttgttctcatttgtttataatttttatttatttgcttaattgtcatttggtttagttgtggtttaatcaattgaaccatgatctaaaattttca |
31273419 |
T |
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| Q |
521 |
tcagtttaaactcaagattga---------------ttttgtaagtaattatgcaactcaaagtgaggtccggtgtttacttttcccctgttgatgatgt |
605 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31273418 |
acagtttaaactcaagattgatttttcaaaatttgattttgtaagtaattatgcaactcaaagtgaggtccggtgtttacttttcccctgttgataatgt |
31273319 |
T |
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