View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13955_high_9 (Length: 556)

Name: NF13955_high_9
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13955_high_9
NF13955_high_9
[»] chr8 (2 HSPs)
chr8 (11-539)||(1945935-1946463)
chr8 (352-403)||(28566362-28566413)
[»] chr6 (3 HSPs)
chr6 (23-403)||(1161506-1161885)
chr6 (352-403)||(7213115-7213166)
chr6 (360-393)||(35163992-35164025)
[»] chr3 (12 HSPs)
chr3 (23-393)||(47361597-47361966)
chr3 (23-403)||(579493-579881)
chr3 (199-296)||(52662181-52662278)
chr3 (423-522)||(9739004-9739103)
chr3 (352-403)||(43191239-43191290)
chr3 (46-148)||(52657269-52657371)
chr3 (343-387)||(52662062-52662106)
chr3 (352-403)||(3422912-3422963)
chr3 (352-403)||(52657156-52657207)
chr3 (419-529)||(46016708-46016818)
chr3 (57-163)||(52662295-52662401)
chr3 (352-393)||(30272749-30272790)
[»] chr7 (6 HSPs)
chr7 (23-347)||(7477801-7478125)
chr7 (104-282)||(7317125-7317303)
chr7 (352-403)||(11698438-11698489)
chr7 (352-403)||(18261001-18261052)
chr7 (352-393)||(33631091-33631132)
chr7 (366-403)||(7477763-7477800)
[»] chr4 (6 HSPs)
chr4 (202-393)||(51806232-51806427)
chr4 (352-403)||(3937867-3937918)
chr4 (57-236)||(31928654-31928833)
chr4 (352-402)||(25110109-25110159)
chr4 (352-403)||(45067191-45067242)
chr4 (353-403)||(47159821-47159871)
[»] chr1 (3 HSPs)
chr1 (57-402)||(19176680-19177027)
chr1 (316-403)||(50715625-50715712)
chr1 (195-393)||(8239887-8240084)
[»] chr5 (5 HSPs)
chr5 (241-403)||(36874226-36874375)
chr5 (355-393)||(39044872-39044910)
chr5 (343-393)||(39790080-39790132)
chr5 (89-269)||(10715352-10715531)
chr5 (352-393)||(7280516-7280557)
[»] chr2 (3 HSPs)
chr2 (44-283)||(6839776-6840015)
chr2 (353-393)||(465428-465468)
chr2 (346-403)||(6840076-6840135)


Alignment Details
Target: chr8 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 11 - 539
Target Start/End: Complemental strand, 1946463 - 1945935
Alignment:
Q  11 gatgaatcggaggtaatatgaacatgattgattgtaactggcagagtgtgatgcaatatattcaaaggcaacgcaatgggaacaatggtactcatcaaat 110  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1946463 gatgaatcggaggtaatatgaacatgattgattgcaactggcagagtgtgatgcaatatattcaaaggcaacgcaatgggaacaatggtactcatcaaat 1946364  T
Q  111 gagtagaatggtcttgagtatcacgcagtatatgatttggaaggaaaggaatgtcagaagatttcaggacatacatcaatcggttcaggagctccttaat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1946363 gagtagaatggtcttgagtatcacgcagtatatgatttggaaggaaaggaatgccagaagatttcaggacatacatcaatcggttcaggagctccttaat 1946264  T
Q  211 caaattaagaagattgtttacattagtgggttgaaatctaaaaagatgaagagtctaatgttaagcttgtgagacctttgacttttgtttgctgttgtgt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1946263 caaattaagaagattgtttacattagtgggttgaaatctaaaaagatgaagagtctaatgttaagcttgtgagacctttgacttttgtttgctgttgtgt 1946164  T
Q  311 gagattaacttttgcttctttgtctttgtggcttcttgttgccatgtagtttgtaataattgttttggttaatgaaagttatcgctctttaccnnnnnnn 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  1946163 gagattaacttttgcttctttgtctttgtggcttcttgttgccatgtagtttgtaataattgttttggttaatgaaagttatcgctctttaccaaaaaaa 1946064  T
Q  411 nnnnnnnncaacttctcacttttgtcatgactttatggtgtgtatggaagcgaagaaatgacaagatttggagcgacattgacactaaccctcgtatgtc 510  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1946063 aaaaaaaacaacttctcacttttgtcatgactttatggtgtgtatggaagcgaagaaatgacaagatttggagcgacattgacactaaccctcgtatgtc 1945964  T
Q  511 tgtccatatggcgtgtgaacccctattac 539  Q
    | |||||||||||||||||||||||||||    
T  1945963 tctccatatggcgtgtgaacccctattac 1945935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 28566413 - 28566362
Alignment:
Q  352 ccatgtagtttgtaataattgttttggttaatgaaagttatcgctctttacc 403  Q
    |||||| |||| |||||||||| ||||||||||||||||||| || ||||||    
T  28566413 ccatgtggtttataataattgtgttggttaatgaaagttatctctatttacc 28566362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 23 - 403
Target Start/End: Original strand, 1161506 - 1161885
Alignment:
Q  23 gtaatatgaacatgattgattgtaactggcagagtgtgatgcaatatattcaaaggcaacgcaatgggaacaatggtactcatcaaatgagtagaatggt 122  Q
    ||||||||||||| |||||||| |||||||| | ||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||    
T  1161506 gtaatatgaacataattgattgcaactggcataatgtgatgcaatatattcaaaggcagtgcaatgg-aacaatggtactcatcaaatgagtagaatggt 1161604  T
Q  123 cttgagtatcacgcagtatatgatttggaaggaaaggaatgtcagaagatttcaggacatacatcaatcggttcaggagctccttaatcaaattaagaag 222  Q
    ||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1161605 cttgagtatcacgcaatatatgattttgaaggaaaggaatgccagaagatttcaggacatacatcaatcggttcaggagctccttaatcaaattaagaag 1161704  T
Q  223 attgtttacattagtgggttgaaatctaaaaagatgaagagtctaatgttaagcttgtgagacctttgacttttgtttgctgttgtgtgagattaacttt 322  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  1161705 attgtctacattagcgggttgaaatctaaaaagatgaagagtctaatgttaagcttgtgagacctttgacttttgtttattgttgtgtgagattaacttt 1161804  T
Q  323 tgcttctttgtctttgtggcttcttgttgccatgtagtttgtaataattgttttggttaatgaaagttatcgctctttacc 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||    
T  1161805 tgcttctttgtctttgtggcttcttgttgccatgtagtttgtaataactgttttggttaatgaaagttatctctatttacc 1161885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 7213166 - 7213115
Alignment:
Q  352 ccatgtagtttgtaataattgttttggttaatgaaagttatcgctctttacc 403  Q
    |||||||||||||||||| ||||||| |||||||||| |||| || ||||||    
T  7213166 ccatgtagtttgtaataactgttttgattaatgaaagatatctctatttacc 7213115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 393
Target Start/End: Complemental strand, 35164025 - 35163992
Alignment:
Q  360 tttgtaataattgttttggttaatgaaagttatc 393  Q
    |||||||||| |||||||||||||||||||||||    
T  35164025 tttgtaataactgttttggttaatgaaagttatc 35163992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 23 - 393
Target Start/End: Original strand, 47361597 - 47361966
Alignment:
Q  23 gtaatatgaacatgattgattgtaactggcagagtgtgatgcaatatattcaaaggcaacgcaatgggaacaatggtactcatcaaatgagtagaatggt 122  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||| ||    
T  47361597 gtaatatgaacataattgattgcaactggcagagtgtgatgcaatatattcaaaggcagtgcaatgggaacaatgatactcatcaaatgagtagaattgt 47361696  T
Q  123 cttgagtatcacgcagtatatgatttggaaggaaaggaatgtcagaagatttcaggacatacatcaatcggttcaggagctccttaatcaaattaagaag 222  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  47361697 cttgagtatcacgcagtatatgatttggaaggaaaggaatgccagaagatttcaggacatacattaatcggttcagaagctccttaatcaaattaagaag 47361796  T
Q  223 attgtttacattagtgggttgaaatctaaaaagatgaagagtctaatgttaagcttgtgagacctttgacttttgtttgctgttgtgtgagattaacttt 322  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  47361797 atcgtttacattagtgggttgaaatctaaaaagatgaagagtctaatgttaagcttgtgagacctttgacttttggttgttgttgtgtgagattaacttt 47361896  T
Q  323 tgcttctttgtctttgtggcttcttgttgccatgtagtttgtaataattgttttggttaatgaaagttatc 393  Q
    ||| || |||| |||||||||| |||||||| ||||||||||||| | |||||||||||||||||||||||    
T  47361897 tgc-tccttgtttttgtggctttttgttgccgtgtagtttgtaatgactgttttggttaatgaaagttatc 47361966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 23 - 403
Target Start/End: Original strand, 579493 - 579881
Alignment:
Q  23 gtaatatgaacatgattgattgtaactggcagagtgtgatgcaatatattcaaaggcaacgcaatgggaacaatggtactcatcaaatgagtagaatggt 122  Q
    |||| |||||||| | || ||| |||||||||| ||||||||||||||||||| | |||  |||   ||||| | ||||||||||  |||  | ||||||    
T  579493 gtaacatgaacattaatgcttgcaactggcagactgtgatgcaatatattcaatgtcaatacaacacgaacactagtactcatcatgtgaacaaaatggt 579592  T
Q  123 cttgagtatcacgcagtatatgatttggaaggaaaggaatgtcagaagatttcaggacatacatcaatcggttcaggagctccttaatcaaattaagaag 222  Q
    ||||||||| |||||||||| |||||| ||| ||| |||||  |||||||||||| |||| || ||||| |||||||| |||||||| ||| | |  |||    
T  579593 cttgagtattacgcagtataagatttgtaagaaaatgaatgctagaagatttcagcacattcaccaatcagttcaggaactccttaaccaagtcacaaag 579692  T
Q  223 attgtttacattagtgggttgaaat-------ctaaaaagatgaagagtctaatgttaagcttgtgagacctttgacttttgt--ttgctgttgtgtgag 313  Q
    |||||||||||||||||||||||||         ||||||  ||||| |||||||| ||||||||||| |||||| |||||||  ||  | || ||||||    
T  579693 attgtttacattagtgggttgaaataaaataaaaaaaaagtcgaagaatctaatgtcaagcttgtgaggcctttggcttttgttgtttgttttttgtgag 579792  T
Q  314 attaacttttgcttctttgtctttgtggcttcttgttgccatgtagtttgtaataattgttttggttaatgaaagttatcgctctttacc 403  Q
    ||||||| ||| |||||||| | |  |||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  579793 attaactattgtttctttgt-tgttaggcttcgtgttgtcatgtagtttgtaataattgttttggttaatgaaagttatctctatttacc 579881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 199 - 296
Target Start/End: Complemental strand, 52662278 - 52662181
Alignment:
Q  199 gagctccttaatcaaattaagaagattgtttacattagtgggttgaaatctaaaaagatgaagagtctaatgttaagcttgtgagacctttgactttt 296  Q
    ||||||||||| ||| | ||  ||||||||||||||||||||||||||| ||| ||||||||||| ||||||  ||||||| |||  |||||||||||    
T  52662278 gagctccttaaccaagtaaaagagattgtttacattagtgggttgaaatgtaagaagatgaagagcctaatgagaagcttgcgaggtctttgactttt 52662181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 423 - 522
Target Start/End: Complemental strand, 9739103 - 9739004
Alignment:
Q  423 ttctcacttttgtcatgactttatggtgtgtatggaagcgaagaaatgacaagatttggagcgacattgacactaaccctcgtatgtctgtccatatggc 522  Q
    ||||||||||| ||| ||||||||| | | |||||||| ||||||| |||||| | | || ||| |||||||||| |||||||||||||| |||||||||    
T  9739103 ttctcacttttatcacgactttatgctatatatggaagtgaagaaacgacaagctctagaacgatattgacactagccctcgtatgtctgcccatatggc 9739004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 43191290 - 43191239
Alignment:
Q  352 ccatgtagtttgtaataattgttttggttaatgaaagttatcgctctttacc 403  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  43191290 ccatgtagtttgtaataattgttttggttaatgaaagttatctctatttacc 43191239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 52657371 - 52657269
Alignment:
Q  46 aactggcagagtgtgatgcaatatattcaaaggcaacgcaatgggaacaatggtactcatcaaatgagtagaatggtcttgagtatcacgcagtatatga 145  Q
    |||||||||| ||||||||| ||||||||||| ||| ||||    || |||||||||||||| |||||||||||||| ||||||   || ||||||||||    
T  52657371 aactggcagattgtgatgcattatattcaaagtcaatgcaacaaaaataatggtactcatcacatgagtagaatggtgttgagtgaaactcagtatatga 52657272  T
Q  146 ttt 148  Q
    |||    
T  52657271 ttt 52657269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 52662106 - 52662062
Alignment:
Q  343 ttcttgttgccatgtagtttgtaataattgttttggttaatgaaa 387  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  52662106 ttcttgatgccatgtagtttgtaataattgttttggttaatgaaa 52662062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 3422963 - 3422912
Alignment:
Q  352 ccatgtagtttgtaataattgttttggttaatgaaagttatcgctctttacc 403  Q
    |||||||||||||||||| ||||||||||||||||||||||| || ||||||    
T  3422963 ccatgtagtttgtaataactgttttggttaatgaaagttatctctatttacc 3422912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 52657207 - 52657156
Alignment:
Q  352 ccatgtagtttgtaataattgttttggttaatgaaagttatcgctctttacc 403  Q
    |||||||||||||||||||||||||||||||||||| ||||| || ||||||    
T  52657207 ccatgtagtttgtaataattgttttggttaatgaaatttatctctatttacc 52657156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 419 - 529
Target Start/End: Complemental strand, 46016818 - 46016708
Alignment:
Q  419 caacttctcacttttgtcatgactttatggtgtgtatggaagcgaagaaatgacaagatttggagcgacattgacactaaccctcgtatgtctgtccata 518  Q
    |||||| ||||||||||||||||||| |||||  |||||||||||||||| |||||| | |  ||||| ||||| ||   | ||||||||| |||||||     
T  46016818 caacttatcacttttgtcatgactttgtggtgcatatggaagcgaagaaacgacaagttcttaagcgatattgatacatgctctcgtatgtttgtccatt 46016719  T
Q  519 tggcgtgtgaa 529  Q
    ||||| |||||    
T  46016718 tggcgcgtgaa 46016708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 52662401 - 52662295
Alignment:
Q  57 tgtgatgcaatatattcaaaggcaacgcaatgggaacaatggtactcatcaaatgagtagaatggtcttgagtatcacgcagtatatgatttggaaggaa 156  Q
    ||||||||| ||||||||||| ||| ||||    | ||||||||||||||| |||||||||||| | |||||| | ||   |||||| ||||||||| ||    
T  52662401 tgtgatgcattatattcaaagtcaatgcaacaaaatcaatggtactcatcacatgagtagaatgatgttgagtgtaacttggtatattatttggaagtaa 52662302  T
Q  157 aggaatg 163  Q
    |||||||    
T  52662301 aggaatg 52662295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 352 - 393
Target Start/End: Complemental strand, 30272790 - 30272749
Alignment:
Q  352 ccatgtagtttgtaataattgttttggttaatgaaagttatc 393  Q
    |||||||||||||||||| |||||||||||||||||| ||||    
T  30272790 ccatgtagtttgtaataactgttttggttaatgaaagatatc 30272749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 23 - 347
Target Start/End: Complemental strand, 7478125 - 7477801
Alignment:
Q  23 gtaatatgaacatgattgattgtaactggcagagtgtgatgcaatatattcaaaggcaacgcaatgggaacaatggtactcatcaaatgagtagaatggt 122  Q
    ||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  7478125 gtaatatgaacataattgattgcaactggcagaatgtgatgcaatatattcaaaggcagtgcaatgggaacaatggtactcatcaaatgagtagaatggt 7478026  T
Q  123 cttgagtatcacgcagtatatgatttggaaggaaaggaatgtcagaagatttcaggacatacatcaatcggttcaggagctccttaatcaaattaagaag 222  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  7478025 cttgagtatcacacagtatatgatttggaaggaaaggaatgccagaagatttcagaacatacatcaatcggttcaggagatccttaatcaaattaagaag 7477926  T
Q  223 attgtttacattagtgggttgaaatctaaaaagatgaagagtctaatgttaagcttgtgagacctttgacttttgtttgctgttgtgtgagattaacttt 322  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  7477925 attgtctacattagtgggttgaaatctaaaaagatgaagagtctaatgttaagcttatgagacctttgacttttgtttgttgttgtgtgagattaacttt 7477826  T
Q  323 tgcttctttgtctttgtggcttctt 347  Q
    ||||||||| ||||||| |||||||    
T  7477825 tgcttctttatctttgtagcttctt 7477801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 104 - 282
Target Start/End: Complemental strand, 7317303 - 7317125
Alignment:
Q  104 atcaaatgagtagaatggtcttgagtatcacgcagtatatgatttggaaggaaaggaatgtcagaagatttcaggacatacatcaatcggttcaggagct 203  Q
    ||||| |||||||||||   |||||| | || ||||||||||||||||| ||||| |||| ||||| ||||||  | ||  |||| |  | |||||||||    
T  7317303 atcaattgagtagaatgacgttgagtgtaacccagtatatgatttggaaagaaagaaatgccagaatatttcataaaatttatcagttagctcaggagct 7317204  T
Q  204 ccttaatcaaattaagaagattgtttacattagtgggttgaaatctaaaaagatgaagagtctaatgttaagcttgtga 282  Q
    |||| | ||||| ||  ||||||| |||||||| || |||||| ||||  |||||||||  ||| ||||||| ||||||    
T  7317203 ccttcaccaaatcaaagagattgtctacattagaggtttgaaaactaatcagatgaagaacctagtgttaagattgtga 7317125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 11698489 - 11698438
Alignment:
Q  352 ccatgtagtttgtaataattgttttggttaatgaaagttatcgctctttacc 403  Q
    |||| ||||||||||||||||||| ||||||||||||||||| || ||||||    
T  11698489 ccatatagtttgtaataattgtttcggttaatgaaagttatctctatttacc 11698438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 18261052 - 18261001
Alignment:
Q  352 ccatgtagtttgtaataattgttttggttaatgaaagttatcgctctttacc 403  Q
    |||||||||||||||||  ||||||||||||||||||||||| || ||||||    
T  18261052 ccatgtagtttgtaatatctgttttggttaatgaaagttatctctatttacc 18261001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 352 - 393
Target Start/End: Complemental strand, 33631132 - 33631091
Alignment:
Q  352 ccatgtagtttgtaataattgttttggttaatgaaagttatc 393  Q
    |||||||||||||||||| | |||||||||||||||||||||    
T  33631132 ccatgtagtttgtaataactcttttggttaatgaaagttatc 33631091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 403
Target Start/End: Complemental strand, 7477800 - 7477763
Alignment:
Q  366 ataattgttttggttaatgaaagttatcgctctttacc 403  Q
    |||||||||||||||||||||||||||| || ||||||    
T  7477800 ataattgttttggttaatgaaagttatctctatttacc 7477763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 4e-70; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 202 - 393
Target Start/End: Complemental strand, 51806427 - 51806232
Alignment:
Q  202 ctccttaatcaaattaagaagattgtttacattagtgggttgaaatctaaaaagatgaagagtctaatgttaagcttgtgagacctttgacttttgtttg 301  Q
    |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||    
T  51806427 ctccttaaacaaatcaaaaagattgtttacattagtgggttgaaatctaaaaagatgaagagtctaatgttaagcttgtgaggcctttggcttttgattg 51806328  T
Q  302 ctgttgtgtgagattaacttttgcttctttgtctttgtggcttcttgttgcc----atgtagtttgtaataattgttttggttaatgaaagttatc 393  Q
     | ||||||||||||||||||||||||||||||||||||||||||||| |||    |||||| ||||||||| |||||||||||||||||||||||    
T  51806327 tttttgtgtgagattaacttttgcttctttgtctttgtggcttcttgtcgccatgtatgtagattgtaataactgttttggttaatgaaagttatc 51806232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 3937918 - 3937867
Alignment:
Q  352 ccatgtagtttgtaataattgttttggttaatgaaagttatcgctctttacc 403  Q
    |||||||||||||||||| |||||||||||||||||| |||| || ||||||    
T  3937918 ccatgtagtttgtaataactgttttggttaatgaaagatatctctatttacc 3937867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 57 - 236
Target Start/End: Complemental strand, 31928833 - 31928654
Alignment:
Q  57 tgtgatgcaatatattcaaaggcaacgcaatgggaacaatggtactcatcaaatgagtagaatggtcttgagtatcacgcagtatatgatttggaaggaa 156  Q
    ||||||||||||||||||| | ||| ||||  ||||||| | ||  |||||| |||||||||||   |||||| | ||  |||||||||||||||| |||    
T  31928833 tgtgatgcaatatattcaatgtcaatgcaacaggaacaacgctatacatcaattgagtagaatgacgttgagtgtaaccgagtatatgatttggaaagaa 31928734  T
Q  157 aggaatgtcagaagatttcaggacatacatcaatcggttcaggagctccttaatcaaattaagaagattgtttacattag 236  Q
    ||||||| || ||  |||||| | || ||||| || | ||| |||||||||   ||||| ||  ||||||| ||||||||    
T  31928733 aggaatgccataatttttcagaaaattcatcagtcagctcaagagctccttcgccaaatcaaagagattgtgtacattag 31928654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 402
Target Start/End: Original strand, 25110109 - 25110159
Alignment:
Q  352 ccatgtagtttgtaataattgttttggttaatgaaagttatcgctctttac 402  Q
    |||||||||||||||||| |||||||||||| |||||||||| || |||||    
T  25110109 ccatgtagtttgtaataactgttttggttaacgaaagttatctctatttac 25110159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 403
Target Start/End: Original strand, 45067191 - 45067242
Alignment:
Q  352 ccatgtagtttgtaataattgttttggttaatgaaagttatcgctctttacc 403  Q
    |||||||||||||||||| | ||||||||| ||||||||||| || ||||||    
T  45067191 ccatgtagtttgtaataactattttggttagtgaaagttatctctatttacc 45067242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 353 - 403
Target Start/End: Complemental strand, 47159871 - 47159821
Alignment:
Q  353 catgtagtttgtaataattgttttggttaatgaaagttatcgctctttacc 403  Q
    ||||||||||||||||| ||||||||||| ||||| ||||| || ||||||    
T  47159871 catgtagtttgtaataaatgttttggttagtgaaatttatctctatttacc 47159821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 57 - 402
Target Start/End: Original strand, 19176680 - 19177027
Alignment:
Q  57 tgtgatgcaatatattcaaaggcaacgcaatgggaa-caatgg--tactcatcaaatgagtagaatggtcttgagtatcacgcagtatatgatttggaag 153  Q
    ||||||||||||||||||||| ||  ||||| |||| |||  |  ||||||||| |||||||||||||| |||||| |||| || | |||||||||||      
T  19176680 tgtgatgcaatatattcaaagtcagtgcaataggaaacaacagagtactcatcacatgagtagaatggttttgagtgtcactcaatgtatgatttggaga 19176779  T
Q  154 gaaaggaatgtcagaagatttcaggacatacatcaatcggttcaggagctccttaatcaaattaagaagattgtttacattagtgggttgaaatcta--a 251  Q
    ||||||||||| |||||||||||| | || |||||||| ||| | ||||||||||| ||||| || ||||| ||||||||| |||| ||||||||||  |    
T  19176780 gaaaggaatgttagaagatttcagtaaattcatcaatcagtttacgagctccttaaccaaatcaaaaagatagtttacatttgtggtttgaaatctaaga 19176879  T
Q  252 aaagatgaagagtctaatgttaagcttgtgagacctttgacttttgtttgctgttgtgtgagattaacttttgcttctttgtctttgtggcttcttgttg 351  Q
    ||||||||||||  |||||||||| |||||||||||||  ||||| ||   | | || |||| ||| || ||| ||||| || ||| ||| |||||||||    
T  19176880 aaagatgaagaggttaatgttaagattgtgagacctttagcttttctt--gtatagtttgagcttagctcttgtttcttagt-tttttggattcttgttg 19176976  T
Q  352 ccatgtagtttgtaataattgttttggttaatgaaagttatcgctctttac 402  Q
    ||||||||||| ||||||||||||||||||||||||| |||| ||||||||    
T  19176977 ccatgtagtttataataattgttttggttaatgaaagatatctctctttac 19177027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 403
Target Start/End: Complemental strand, 50715712 - 50715625
Alignment:
Q  316 taacttttgcttctttgtctttgtggcttcttgttgccatgtagtttgtaataattgttt-tggttaatgaaagttatcgctctttacc 403  Q
    ||||| ||| ||||||||  |||||| |||||||| ||||||||||||||||| |||||| ||||||||| |||||||| || ||||||    
T  50715712 taactcttgtttctttgttgttgtgg-ttcttgtttccatgtagtttgtaatagttgtttatggttaatggaagttatctctttttacc 50715625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 195 - 393
Target Start/End: Complemental strand, 8240084 - 8239887
Alignment:
Q  195 tcaggagctccttaatcaaattaagaagattgtttacattagtgggttgaaatctaaaaagatgaagagtctaatgttaagcttgtgagacctttgactt 294  Q
    ||||||||||||||| ||||| ||||||||||  |||||||| || || ||| ||| | | ||||| || ||||||||||| |||||||   | ||||||    
T  8240084 tcaggagctccttaaccaaatcaagaagattgaatacattagaggtttaaaaactacacatatgaacagcctaatgttaagattgtgag-gttgtgactt 8239986  T
Q  295 ttgtttgctgttgtgtgagattaacttttgcttctttgt--ctttgtggcttcttgttgccatgtagtttgtaataattgttttggttaatgaaagttat 392  Q
    ||  ||| | |||| | || |||||| ||| |||||| |   ||| ||| |||||| |||||| ||||||||||| | ||||||| ||||||||||||||    
T  8239985 tttcttg-ttttgtttaagcttaactcttgtttctttattagtttatgg-ttcttgatgccatttagtttgtaatgactgttttgattaatgaaagttat 8239888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 241 - 403
Target Start/End: Original strand, 36874226 - 36874375
Alignment:
Q  241 ttgaaatctaaaaagatgaagagtctaatgttaagcttgtgagacctttgacttttgtttgctgttgtgtgagattaacttttgcttctttgtctttgtg 340  Q
    ||||| |||||||||||||||||||||||||||||||             ||||||||||| |||||| |||||||||||||||||||||| ||||||||    
T  36874226 ttgaattctaaaaagatgaagagtctaatgttaagct-------------acttttgtttgttgttgtttgagattaacttttgcttctttatctttgtg 36874312  T
Q  341 gcttcttgttgccatgtagtttgtaataattgttttggttaatgaaagttatcgctctttacc 403  Q
    | || |||||||||||||||||||||||| | |||||||||||||||||| || || ||||||    
T  36874313 gtttgttgttgccatgtagtttgtaataactattttggttaatgaaagttttctctatttacc 36874375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 355 - 393
Target Start/End: Complemental strand, 39044910 - 39044872
Alignment:
Q  355 tgtagtttgtaataattgttttggttaatgaaagttatc 393  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39044910 tgtagtttgtaataattgttttggttaatgaaagttatc 39044872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 39790132 - 39790080
Alignment:
Q  343 ttcttgttgccatgtagtttgtaataattgtttt--ggttaatgaaagttatc 393  Q
    ||||||||| ||||||||||||||||||||||||  | |||||||||||||||    
T  39790132 ttcttgttgtcatgtagtttgtaataattgtttttggtttaatgaaagttatc 39790080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 269
Target Start/End: Original strand, 10715352 - 10715531
Alignment:
Q  89 ggaacaatggtactcatcaaatgagtagaatggtcttgagtatcacgcagtatatgatttggaaggaaaggaatgtcagaagatttcaggacatacatca 188  Q
    ||||||||| ||||||||||||||||| |||||| |||||   ||| || || ||||||||||| |||| |  ||| | ||  |||||  |||  ||| |    
T  10715352 ggaacaatgatactcatcaaatgagtataatggttttgagctacactcaataaatgatttggaa-gaaatgtttgttataatctttcaaaacaatcatta 10715450  T
Q  189 atcggttcaggagctccttaatcaaattaagaagattgtttacattagtgggttgaaatctaaaaagatgaagagtctaat 269  Q
    ||| | |||||||| |||||| ||||| ||  ||||| |||||||||| || |||||| ||||| | |||||||| |||||    
T  10715451 atcagctcaggagccccttaaccaaatcaaagagattatttacattagaggtttgaaaactaaacaaatgaagagcctaat 10715531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 393
Target Start/End: Original strand, 7280516 - 7280557
Alignment:
Q  352 ccatgtagtttgtaataattgttttggttaatgaaagttatc 393  Q
    |||||||||||||||||| ||| ||||||||| |||||||||    
T  7280516 ccatgtagtttgtaataactgtgttggttaataaaagttatc 7280557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 283
Target Start/End: Original strand, 6839776 - 6840015
Alignment:
Q  44 gtaactggcagagtgtgatgcaatatattcaaaggcaacgcaatgggaacaatggtactcatcaaatgagtagaatggtcttgagtatcacgcagtatat 143  Q
    |||| ||||||  |||||||||||||||| |||| ||| ||||   |||||| | ||| |||||| |||||||||||   |||||| | || ||||||||    
T  6839776 gtaattggcaggatgtgatgcaatatattgaaagtcaatgcaacaagaacaacgctacacatcaattgagtagaatgacgttgagtgtaacccagtatat 6839875  T
Q  144 gatttggaaggaaaggaatgtcagaagatttcaggacatacatcaatcggttcaggagctccttaatcaaattaagaagattgtttacattagtgggttg 243  Q
    ||||||||| |||||||||| |||||  |||||| | || ||||| || | ||||| |||||||   ||||| ||  |||| || |||||||| || |||    
T  6839876 gatttggaaagaaaggaatgccagaacttttcagaaaattcatcagtcagctcaggggctccttcgccaaatcaaagagatcgtctacattagaggtttg 6839975  T
Q  244 aaatctaaaaagatgaagagtctaatgttaagcttgtgag 283  Q
    ||| ||||  |||||||||  ||| ||||||| |||||||    
T  6839976 aaaactaatcagatgaagaacctagtgttaagattgtgag 6840015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 353 - 393
Target Start/End: Complemental strand, 465468 - 465428
Alignment:
Q  353 catgtagtttgtaataattgttttggttaatgaaagttatc 393  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  465468 catgtagtttgtaataattgttttggttaatgaaagttatc 465428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 403
Target Start/End: Original strand, 6840076 - 6840135
Alignment:
Q  346 ttgttgccatgtagtttgtaataattgtttt--ggttaatgaaagttatcgctctttacc 403  Q
    |||||||||||||||||||||||| ||||||  | ||| ||||||||||| || ||||||    
T  6840076 ttgttgccatgtagtttgtaataactgtttttggtttattgaaagttatctctatttacc 6840135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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