View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13955_low_1 (Length: 735)

Name: NF13955_low_1
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13955_low_1
NF13955_low_1
[»] chr2 (1 HSPs)
chr2 (1-730)||(3638740-3639465)


Alignment Details
Target: chr2 (Bit Score: 652; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 1 - 730
Target Start/End: Complemental strand, 3639465 - 3638740
Alignment:
Q  1 aatagagtaaagtgtttttgatgaagccatcgaagatgtgaccggatttgatgagacgcgcgtggatttcaagacctttggcgtgcgcatgataggaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3639465 aatagagtaaagtgtttttgatgaagccatcgaagatgtgaccggatttgatgagacgcgcgtggatttcaagacctttggcgtgcgcatgataggaaca 3639366  T
Q  101 acatgctttgagcgcgtgggtgaaggtgtagtgattgtgggaagaagaacaagagagcatttgattgcagaggttgaagaaagctttgccattatcgtgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3639365 acatgctttgagcgcgtgggtgaaggtgtagtgattgtgggaagaagaacaagagagcatttgattgcagaggttgaagaaagctttgacattatcgtgt 3639266  T
Q  201 gattttgaaagaagtttaaggttttgatttaacaattggggattagggtttatgatttgaaattgagcgagcttcgctatttgattcagattctgaggct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3639265 gattttgaaagaagtttaaggttttgatttaacaattggggattagggtttatgatttgaaattgagagagcttcgctatttgattcagattctgaggct 3639166  T
Q  301 tcatttgtattcttgttaatctgaagctccatttagtatttagtttagatgagttgggtggtctcgactcgagagtagtagtaacttgtaacagtcatgc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     |||||||||||||||||| |||||||||||||    
T  3639165 tcatttgtattcttgttaatctgaagctccatttagtatttagtttagatgagtcgggtggtc-----tcgagagtagtagtaactagtaacagtcatgc 3639071  T
Q  401 ttgagtt---agaagttgggggaaaattgcatttttccctccaacccggaatgtatttgggttataaaatcgtccgggtcgtgtgtgtttaaacgggtcg 497  Q
    |||||||   ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  3639070 ttgagttagaagaagttgggggaaaattgtatttttccctccaacccggaatgtatttgggttataaaatcgtccgggtc--gtgtgtttaaacgggtcg 3638973  T
Q  498 gtccggtttattatgcaaataaaattacccggttttgtttccaaaaacacttttgcctcctaagttcatagcttcttcaatcacctctcgtacactgtac 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3638972 gtccggtttattatgcaaataaaattacccggttttgtttccaaaaacacttttgcctcctaagttcatagcttcttcaattacctctcgtacactgtac 3638873  T
Q  598 gagattcttagtgcaattcgattttgctcatttgaactcttgtattcgtttttgtgtgccagtagcgtgtgattctgtgaaatttgttggatagtttgat 697  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3638872 gagattcttagtacaattcgattttgctcatttaaactcttgtattcgtttttgtctgccagtagcgtgtgattctgtgaaatttgttggatagtttgat 3638773  T
Q  698 tcaggagaaaaggtttgtagttttatgcctatg 730  Q
    |||||||||||||||||||||||||||||||||    
T  3638772 tcaggagaaaaggtttgtagttttatgcctatg 3638740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University