View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_low_12 (Length: 537)
Name: NF13955_low_12
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Original strand, 41445437 - 41445957
Alignment:
| Q |
1 |
tgtccttctaaatagttattcttaagattgagagttttcaattttgttaggccaccaaacacatccggaattcgaccgatgagtttattccctgaaaaat |
100 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41445437 |
tgtccttttaaatagttattcttaagatagagagttttcaattttgttaggccaccaaacacatccggaattcgaccgatgagtttattccctgaaaaat |
41445536 |
T |
|
| Q |
101 |
ccatgggagtgagttgtttaaggcttgaaagccatgatggtggtagctcacctcctacattgtttcctgagagactcaagaaggtaagttgtgtgaggtt |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41445537 |
ccatgagagtgagttgtttaaggcttgaaagccatgatggtggtagctcacctcctacattgtttcctgagagactcaagaaggtaagttgtgtgaggtt |
41445636 |
T |
|
| Q |
201 |
agagaaaaactgtaggattgacccttggaattgacatcgtgaaagatccaatatattaagggaagtgctgcaactcaactttggaagttgaccttgaagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41445637 |
agagaaaaactgtaggattgacccttggaattgacatcgtgaaagatccaatatattaagggaagtgctgcaactcaactttggaagttgaccttgaagg |
41445736 |
T |
|
| Q |
301 |
tcgaagttagctgacatatatagctcttgaagttttggcaaacagagagtgttttcatttgacatcatgtttccacttaaaccagttcctttaagactag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41445737 |
tcgaagttagctgacatatatagctcttgaagttttggcaaacaaagagtgttttcatttgacatcatgtttccacttaaaccagttcctttaagactag |
41445836 |
T |
|
| Q |
401 |
tggtaatcaaagaagatagattaagaaatgnnnnnnntgagcttggcgcgatgaaagacatgtttgtatggtcaaaaacaagctctctgtcaaagatgtt |
500 |
Q |
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| T |
41445837 |
tagtaatcaaagaagatagattaagaaatgaaaaaaatgagcttggcgcgatgaaagacatgtttgtatggtcaaaaacaagctctctgtcaaagatgtt |
41445936 |
T |
|
| Q |
501 |
gcattttgcagcagcctcttc |
521 |
Q |
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|||||||||||||||||||| |
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| T |
41445937 |
tcattttgcagcagcctcttc |
41445957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Original strand, 41432715 - 41433233
Alignment:
| Q |
1 |
tgtccttctaaatagttattcttaagattgagagttttcaattttgttaggccaccaaacacatccggaattcgaccgatgagtttattccctgaaaaat |
100 |
Q |
| |
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||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41432715 |
tgtccttctaagcagttattcttaaaattgagagttttcaatttggttaggccaccaaacacatccggaattcgaccgatgagtttattccctgaaaaat |
41432814 |
T |
|
| Q |
101 |
ccatgggagtgagttgtttaaggcttgaaagccatgatggtggtagctcacctcctacattgtttcctgagagactcaagaaggtaagttgtgtgaggtt |
200 |
Q |
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||||| ||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41432815 |
ccatgagagtgagttgtttaaggcttgtaagccatgatggaggtagctcgcctcctacattgtttcctgagagactcaagaaggtaagttgtgtgaggtt |
41432914 |
T |
|
| Q |
201 |
agagaaaaactgtaggattgacccttggaattgacatcgtgaaagatccaatatattaagggaagtgctgcaactcaactttggaagttgaccttgaagg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| |||||||| | |||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
41432915 |
agagaaaaactgtaggattgacccttggaattgacattgtgaaatatccaatacagtaagggaaatgctgcaactcaactttggaagttgacctcgaagg |
41433014 |
T |
|
| Q |
301 |
tcgaagttagctgacatatatagctcttgaagttttggcaaacagagagtgttttcatttgacatcatgtttccacttaaaccagttcctttaagactag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41433015 |
tcgaagttagctgacatatatagctcttgaagttttggcaaacaaagagtgttttcatttgacatcatgtttccacttaaaccaattcctttaagactaa |
41433114 |
T |
|
| Q |
401 |
tggtaatcaaagaagatagattaagaaatgnnnnnnntgagcttggcgcgatgaaagacatgtttgtatggtcaaaaacaagctctctgtcaaagatgtt |
500 |
Q |
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| | || ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41433115 |
tagcaaccaaagaagatagattaagaaatgaaaaaaatgagcttggcgcaatgaaagacatgtttgtatggtcaaaaacaag--ctctgtcaaagatgtt |
41433212 |
T |
|
| Q |
501 |
gcattttgcagcagcctcttc |
521 |
Q |
| |
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||||||||||||||||||||| |
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| T |
41433213 |
gcattttgcagcagcctcttc |
41433233 |
T |
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Back To:
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