View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13955_low_13 (Length: 515)

Name: NF13955_low_13
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13955_low_13
NF13955_low_13
[»] chr3 (12 HSPs)
chr3 (14-505)||(38027681-38028172)
chr3 (79-505)||(38032508-38032929)
chr3 (79-504)||(38035288-38035717)
chr3 (321-505)||(38038773-38038957)
chr3 (275-505)||(50913702-50913914)
chr3 (185-252)||(38039016-38039083)
chr3 (338-445)||(50906573-50906680)
chr3 (25-66)||(38039441-38039482)
chr3 (363-495)||(55082519-55082657)
chr3 (338-412)||(38042243-38042317)
chr3 (27-66)||(38033147-38033186)
chr3 (84-150)||(38042594-38042660)
[»] chr8 (5 HSPs)
chr8 (321-505)||(21608483-21608667)
chr8 (14-61)||(21604113-21604160)
chr8 (185-252)||(21608726-21608793)
chr8 (338-412)||(21633904-21633978)
chr8 (25-66)||(21609159-21609200)
[»] chr2 (1 HSPs)
chr2 (338-445)||(3072506-3072613)


Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 14 - 505
Target Start/End: Complemental strand, 38028172 - 38027681
Alignment:
Q  14 attccatcattaacttacacaaacccaacctctgaaagcaagcttgtgatgatcatttactattccaagaccatgtgaatagcacgggaagtccttatga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38028172 attccatcattaacttacacaaacccaacctctgaaagcaagcttgtgatgatcatttactattccaagaccatgtgaatagcacgggaagtccttatga 38028073  T
Q  114 ttatggtctccatcacattcttcaaacatcacaagaaacatgcaactcgcagattaattggtgactaacgtcgttgctttatgtgatcaattattggtgt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38028072 ttatggtctccatcacattcttcaaacatcacaagaaacatgcaactcgcagattaattggtgactaacgtcgttgctttatgtgatcaattattggtgt 38027973  T
Q  214 attcatttcttcatttacaattcgcttatccttatagtttatagaaagttttactttaaacaaaggtttgtatggcccagtaatatatgcaaaagaatta 313  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38027972 attcatttcttcatttacaattcgcttatccttatagtttataggaaggtttactttaaacaaaggtttgtatggcccagtaatatatgcaaaagaatta 38027873  T
Q  314 tctgtcttggcttgtgtttgtgcatgcaatgtaattattttagatgacacaaaaaacaacacataaattgacaagaatatagtttcttaaggttctcatc 413  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38027872 tcagtcttggcttgtgtttgtgcatgcaatgtaattattttagatgacacaaaaaacaacacataaattgacaagaatatagtttcttaaggttctcatc 38027773  T
Q  414 taagttttccacataagaggaaacatcaaaattgataaaggaattgctgatgtacgaaaattatcttaactggtcaatcctactatcctatg 505  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38027772 taagttttccacataagaggaaacatcaaaattgataaagaaattgctgatgtacgaaaattatctcaactggtcaatcctactatcctatg 38027681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 79 - 505
Target Start/End: Complemental strand, 38032929 - 38032508
Alignment:
Q  79 caagaccatgtgaatagcacgggaagtccttatgattatggtctccatcacattcttcaaacatcacaagaaacatgcaactcgcagattaattggtgac 178  Q
    |||| ||||||||| | || ||||||||||  |||||| | |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||    
T  38032929 caagtccatgtgaagatcatgggaagtcctcgtgattacgatctccatcacattcttcaaacatcacaagaaacatgcaactcacggattaattggttac 38032830  T
Q  179 taacgtcgttgctttatgtgatcaattattggtgtattcatttcttcatttacaattcgcttatccttatagtttatagaaagttttactttaaacaaag 278  Q
    || |||   || ||||||||||||| | |  || ||||||||||||||||||||||||||||||||||||||| || |||||| ||| |||| |||||||    
T  38032829 tagcgt---tggtttatgtgatcaactgtcagtatattcatttcttcatttacaattcgcttatccttatagtctaaagaaaggttttctttgaacaaag 38032733  T
Q  279 gtttgtatggcccagtaatatatgcaaaagaattatctgtcttggcttgtgtttgtgcatgcaatgtaattattttagatgacacaaaaaacaacacata 378  Q
    |||| |||| ||| |||||||||| |||||||||| | ||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||  |    
T  38032732 gtttatatgaccccgtaatatatgtaaaagaattaccagtcctggcttgtgtttgtgcatgaaatttaattattttagatgacacaagaaacaacac--a 38032635  T
Q  379 aattgacaagaatatagtttcttaaggttctcatctaagttttccacataagaggaaacatcaaaattgataaaggaattgctgatgtacgaaaattatc 478  Q
    |||| |||||||||||||||| |||||||||||| || | ||||||| |||||||||||||||||||||| |||| |||| ||||||||| |||||| ||    
T  38032634 aattcacaagaatatagtttcataaggttctcatttatgatttccacctaagaggaaacatcaaaattgacaaagaaatttctgatgtacaaaaattgtc 38032535  T
Q  479 ttaactggtcaatcctactatcctatg 505  Q
    | ||||||||||||||||| |||||||    
T  38032534 tcaactggtcaatcctactctcctatg 38032508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 79 - 504
Target Start/End: Complemental strand, 38035717 - 38035288
Alignment:
Q  79 caagaccatgtgaatagcacgggaagtccttatgattatggtctccatcacattcttcaaacatcacaagaaacatgcaactcgcagattaattggtgac 178  Q
    |||| |||| |||| ||||||| |||||||| ||||  || ||| ||  ||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  38035717 caagtccatctgaagagcacggaaagtccttgtgatcgtgatcttcactacattcttcaaacatcacaagaaacatgcaaatcacagattaattggtgac 38035618  T
Q  179 taacgtcgttgctttatgtgatcaattattggtgtattcatttcttcatttacaattcgcttatccttatagtttatagaaagttttactttaaacaaag 278  Q
    |||| |   || ||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||| || ||| ||||||||||||    
T  38035617 taacat---tggtttatctgatcaattattggtatattcatttcttcatttacatttcgcttatccttatagttta-agacagattttctttaaacaaag 38035522  T
Q  279 gtttgtatggcccagtaatatatgcaaaagaattatctgtct-------tggcttgtgtttgtgcatgcaatgtaattattttagatgacac-aaaaaac 370  Q
    | ||||||||||  |||||||||||||||||||||   ||||       |||||||||||||||||||||||| |||||||| | ||||||| ||||||     
T  38035521 ggttgtatggcctcgtaatatatgcaaaagaattactagtcttcgtgcatggcttgtgtttgtgcatgcaatgcaattatttgaaatgacactaaaaaag 38035422  T
Q  371 aacacataaattgacaagaatatagtttcttaaggttctcatctaagttttccacataagaggaaacatcaaaattgataaaggaattgctgatgtacga 470  Q
    |||||||||||| | ||||||||| |||||||| |||||||| |||| ||||||| |||||||||||||||||||||| |||  |||||||||||||| |    
T  38035421 aacacataaattcagaagaatataatttcttaaagttctcatttaagatttccacttaagaggaaacatcaaaattgacaaaaaaattgctgatgtacaa 38035322  T
Q  471 aaattatcttaactggtcaatcctactatcctat 504  Q
    ||||| ||| || |||||||||||| | ||||||    
T  38035321 aaattgtctcaattggtcaatcctattgtcctat 38035288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 321 - 505
Target Start/End: Complemental strand, 38038957 - 38038773
Alignment:
Q  321 tggcttgtgtttgtgcatgcaatgtaattattttagatgacacaaaaaacaacacataaattgacaagaatatagtttcttaaggttctcatctaagttt 420  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| || | ||    
T  38038957 tggcttgtgtttgtgcatgcaatgcaattatttgagatgacacaaaaaacaacacataaattcacaagaatatagtttcataaggttctcatttatgatt 38038858  T
Q  421 tccacataagaggaaacatcaaaattgataaaggaattgctgatgtacgaaaattatcttaactggtcaatcctactatcctatg 505  Q
    || || |||||||||||||||||||||| |||| | |||||||||||| |||||| ||| ||||||||||||||||| |||||||    
T  38038857 tcaacttaagaggaaacatcaaaattgacaaagaagttgctgatgtacaaaaattgtctcaactggtcaatcctactctcctatg 38038773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 275 - 505
Target Start/End: Complemental strand, 50913914 - 50913702
Alignment:
Q  275 aaaggtttgtatggcccagtaatatatgcaaaagaattatctgtcttggcttgtgtttgtgcatgcaatgtaattattttagatgacacaaaaaacaaca 374  Q
    ||||||||||||||||   |||||||||||||||||||| | |||||||          ||||||||||| || ||||| ||||||||||||||| ||||    
T  50913914 aaaggtttgtatggcctcctaatatatgcaaaagaattaccagtcttgg----------tgcatgcaatgcaactatttgagatgacacaaaaaataaca 50913825  T
Q  375 cataaattgacaagaatatagtttcttaaggttctcatctaagttttccacataagaggaaacatcaaaattgataaaggaattgctgatgtacgaaaat 474  Q
    ||||||        ||||||||||||||||||| |||| |||| ||||||| ||||||||| |||||||||||| |||| |||| | ||||||| ||| |    
T  50913824 cataaa--------aatatagtttcttaaggttatcatttaagatttccacttaagaggaagcatcaaaattgacaaagaaatttccgatgtacaaaact 50913733  T
Q  475 tatcttaactggtcaatcctactatcctatg 505  Q
    | ||| |||| |||| |||||||||||||||    
T  50913732 tgtctcaactagtcagtcctactatcctatg 50913702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 38039083 - 38039016
Alignment:
Q  185 cgttgctttatgtgatcaattattggtgtattcatttcttcatttacaattcgcttatccttatagtt 252  Q
    ||||| ||||||| ||||||||||||| | |||||||||||||||||| ||| |||||||||||||||    
T  38039083 cgttggtttatgttatcaattattggtatgttcatttcttcatttacatttcacttatccttatagtt 38039016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 338 - 445
Target Start/End: Original strand, 50906573 - 50906680
Alignment:
Q  338 tgcaatgtaattattttagatgacacaaaaaacaacacataaattgacaagaatatagtttcttaaggttctcatctaagttttccacataagaggaaac 437  Q
    ||||||| || ||||| || ||||||||||||||| |  |||||| |||||||||||||||  |||| ||||||| |  | ||||||| |||||||||||    
T  50906573 tgcaatgcaagtatttcaggtgacacaaaaaacaatagctaaattcacaagaatatagttttgtaagattctcatttctgatttccacttaagaggaaac 50906672  T
Q  438 atcaaaat 445  Q
    ||||||||    
T  50906673 atcaaaat 50906680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 38039482 - 38039441
Alignment:
Q  25 aacttacacaaacccaacctctgaaagcaagcttgtgatgat 66  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38039482 aacttacacaaacccaacctctgaaagcaagcttgtgatgat 38039441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 495
Target Start/End: Original strand, 55082519 - 55082657
Alignment:
Q  363 caaaaaacaacacataaattgacaagaatatagtttctta------aggttctcatctaagttttccacataagaggaaacatcaaaattgataaaggaa 456  Q
    |||||||||||| ||||||| | |||||||||||||| |       |||||||||| | || ||||||| |||||||||| |||||||| || |||| ||    
T  55082519 caaaaaacaacagataaattcaaaagaatatagtttcattgaagttaggttctcatttcagatttccacttaagaggaaagatcaaaatggacaaagaaa 55082618  T
Q  457 ttgctgatgtacgaaaattatcttaactggtcaatccta 495  Q
    || ||||||||||||  || ||| |||| ||||||||||    
T  55082619 ttcctgatgtacgaatgttgtctcaactagtcaatccta 55082657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 38042317 - 38042243
Alignment:
Q  338 tgcaatgtaattattttagatgacacaaaaaacaacacataaattgacaagaatatagtttcttaaggttctcat 412  Q
    ||||||| || ||||| || ||||||||||||||| | ||||||| |||||||||||||||  ||||||||||||    
T  38042317 tgcaatgcaagtatttcaggtgacacaaaaaacaaaagataaattcacaagaatatagttttgtaaggttctcat 38042243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 38033186 - 38033147
Alignment:
Q  27 cttacacaaacccaacctctgaaagcaagcttgtgatgat 66  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  38033186 cttacacaaacctaacctctgaatgcaagcttgtgatgat 38033147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 38042660 - 38042594
Alignment:
Q  84 ccatgtgaatagcacgggaagtccttatgattatggtctccatcacattcttcaaacatcacaagaa 150  Q
    ||||||||||||||| |||||||| |  |||| |||||| |  ||| ||||||||||||||||||||    
T  38042660 ccatgtgaatagcactggaagtccatgcgattctggtcttctccaccttcttcaaacatcacaagaa 38042594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 9e-62; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 321 - 505
Target Start/End: Complemental strand, 21608667 - 21608483
Alignment:
Q  321 tggcttgtgtttgtgcatgcaatgtaattattttagatgacacaaaaaacaacacataaattgacaagaatatagtttcttaaggttctcatctaagttt 420  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| || | ||    
T  21608667 tggcttgtgtttgtgcatgcaatgcaattatttgagatgacacaaaaaacaacacataaattcacaagaatatagtttcataaggttctcatttatgatt 21608568  T
Q  421 tccacataagaggaaacatcaaaattgataaaggaattgctgatgtacgaaaattatcttaactggtcaatcctactatcctatg 505  Q
    || ||||||||||||||||||||||||| |||| |||| ||||||||| |||| | ||| ||||||||||||||||| |||||||    
T  21608567 tcaacataagaggaaacatcaaaattgacaaagaaattactgatgtacaaaaaatgtctcaactggtcaatcctactctcctatg 21608483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 21604160 - 21604113
Alignment:
Q  14 attccatcattaacttacacaaacccaacctctgaaagcaagcttgtg 61  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  21604160 attccatcattaacttgcacaaacccaacctctgaaagcaagcttgtg 21604113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 21608793 - 21608726
Alignment:
Q  185 cgttgctttatgtgatcaattattggtgtattcatttcttcatttacaattcgcttatccttatagtt 252  Q
    ||||| ||||||| ||||||||||||| | |||||||||||||||||| |||  ||||||||||||||    
T  21608793 cgttggtttatgttatcaattattggtatgttcatttcttcatttacatttcagttatccttatagtt 21608726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 21633978 - 21633904
Alignment:
Q  338 tgcaatgtaattattttagatgacacaaaaaacaacacataaattgacaagaatatagtttcttaaggttctcat 412  Q
    ||||||| || ||||| || ||||||||||||||| | ||||||| |||||||||||||||  ||||||||||||    
T  21633978 tgcaatgcaagtatttcaggtgacacaaaaaacaaaagataaattcacaagaatatagttttgtaaggttctcat 21633904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 21609200 - 21609159
Alignment:
Q  25 aacttacacaaacccaacctctgaaagcaagcttgtgatgat 66  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  21609200 aacttacacaaacccaacctatgaaagcaagcttgtgatgat 21609159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 338 - 445
Target Start/End: Complemental strand, 3072613 - 3072506
Alignment:
Q  338 tgcaatgtaattattttagatgacacaaaaaacaacacataaattgacaagaatatagtttcttaaggttctcatctaagttttccacataagaggaaac 437  Q
    ||||||| || ||||| || ||||||||||||||| | ||||||| |||||||||||||||  || ||||||||| |  | |||||||  ||||||||||    
T  3072613 tgcaatgcaagtatttcaggtgacacaaaaaacaaaagataaattcacaagaatatagttttgtacggttctcatttctgatttccactcaagaggaaac 3072514  T
Q  438 atcaaaat 445  Q
    ||||||||    
T  3072513 atcaaaat 3072506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University