View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_low_16 (Length: 485)
Name: NF13955_low_16
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 12 - 464
Target Start/End: Complemental strand, 39100232 - 39099799
Alignment:
| Q |
12 |
atgaagttaattgtgtttgtatgtgtatatgtcgtttatgtaatgtaataattaatgcaataaaagaagagcagcaacaaatgtatgaagaaggctttca |
111 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39100232 |
atgaagttaattttttttgtatgtgtatatgtcgtttatgtaatgtaataattaatgcagtaaaagaagagcagcaacaaatgtatgaagaaggctttca |
39100133 |
T |
|
| Q |
112 |
atcaaagaaataannnnnnnnnnnnnnnnnatagagtatatttatacttattgataaatataaatgataacaacaatagttagagctgacctcctttnnn |
211 |
Q |
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| T |
39100132 |
atcaaagaaataatgtgtgt----------atagagtatatttatacttgttgataaatataaatgataacaacaatagttagagatgacctcctttaaa |
39100043 |
T |
|
| Q |
212 |
nnnnnnnnnnnnnnnttagagctgacccaaggggctgcaaatgaggcagcagccataatctcaaatatttttagcctcaaacttattatatatacttttc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39100042 |
aaaaa----------ttagagctgacccaaggggctgcaaatgaggcagcagccataatctcaaatatttttagcctcaaacttattatatatacttttc |
39099953 |
T |
|
| Q |
312 |
atttagttaatactaattaaattatattcaacttccgagtttacaaaacannnnnnnnaataacaaatattagtatgttaatttcctt--nnnnnnntta |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||| |||||||||||| ||| |
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| T |
39099952 |
atttagttaatactaattaaattatattcaacttccgagtttacaaaaca-tttttttaataataaatgttagtacgttaatttccttaaaaaaaaatta |
39099854 |
T |
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| Q |
410 |
gtatgttagttgttatgttaattttttgaatcataaacctctatctccataatcg |
464 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39099853 |
gtatgttaattgttatgttaattttttgaatcataaacctctatctccataatcg |
39099799 |
T |
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