View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_low_17 (Length: 479)
Name: NF13955_low_17
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 14801316 - 14800852
Alignment:
| Q |
1 |
tcatcacaactcggcagaaggaagttcaaagtaggaactgattgaatcatcttcgttattattttcattttcacgcactattcttccttgtgcattaatg |
100 |
Q |
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| T |
14801316 |
tcatcacaactcggcagaaggaagttcaaagtaggaactgattgaatcatcttcgttattattttcattttcacgcactattcttccttgtgcattaatg |
14801217 |
T |
|
| Q |
101 |
tcaaaggtttcaaaagaaaatgaaaatgtactagacatcacattcattgaacaatccattttggtttcactttttcttggtttaattggtttcactttac |
200 |
Q |
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| T |
14801216 |
tcaaaggtttcaaaagaaaatgaaaatgtactagacatcacattcattgaacaatccatattggtttcactttttcttggtttaattggtttcactttac |
14801117 |
T |
|
| Q |
201 |
caaaactcggaagacacattctaaatgcacaacatttgaatccatcgccatcctttggtccatctttgacaataatagcttcgcttttgctgcaactttg |
300 |
Q |
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| T |
14801116 |
caaaacctggaagacacattctaaatgcacaacatttgaatccatcgccatcctttggtccatcattgacaataatagcttcgcttttgctgcaactttg |
14801017 |
T |
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| Q |
301 |
ttgtttcgtgttaccattttcactcggcctcagatcaaattcatcggagagcgcatgagtttttcctttgctacatgaaattgacatgcttttccattgc |
400 |
Q |
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| T |
14801016 |
ttgtttcgtgttaccattttcactcggcctcagatcaaattcatcggagagtgcatgagtttttcctttgctacatgaaattgacatgcttttccattgc |
14800917 |
T |
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| Q |
401 |
ttatgaagtttcttgtgtgttaagttacttaccttacttggtacttcttgactctgagatgatga |
465 |
Q |
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| T |
14800916 |
ttatgacgattcttgtgtgttaagttacttaccttacttggtaattcttgattttgagatgatga |
14800852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 14805048 - 14804805
Alignment:
| Q |
1 |
tcatcacaactcggcagaaggaagttcaaagtaggaactgattgaatcatcttcgttattattttcattttcacgcactattcttccttgtgcattaatg |
100 |
Q |
| |
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|||||||||| ||| |||||||||||||||||| |||||||| |||| |||||| ||||||||||| || |||||||||||||||||||||||| |
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| T |
14805048 |
tcatcacaacgcggtagaaggaagttcaaagtaagaactgatggaattatcttcattattattttcc------cggactattcttccttgtgcattaatg |
14804955 |
T |
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| Q |
101 |
tcaaaggtttcaaaagaaaatgaaaatgtactagacatcacattcattgaacaatccattttggtttcactttttcttggtttaattggtttcactttac |
200 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||| | |||||||||||| ||||||| |
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| T |
14804954 |
tcaaagttttcaaaagaaattgaaaatgtactagacatcacattcattgaataatccaccttggtttcaatttttctagttttaattggttttactttac |
14804855 |
T |
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| Q |
201 |
caaaactcggaagacacattctaaatgcacaacatttgaatccatcgcca |
250 |
Q |
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| T |
14804854 |
caaaacctggaaaacacattccaaatgaatggcatttgaatccatggcca |
14804805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 467
Target Start/End: Complemental strand, 14804738 - 14804567
Alignment:
| Q |
296 |
ctttgttgtttcgtgttaccattttcactcggcctcagatcaaattcatcggagagcgcatgagtttttcctttgctacatgaaattgacatgcttttcc |
395 |
Q |
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|||||||||||| | || |||||||| ||| || ||||| |||||||| | || ||||| ||||||||||||| ||| | ||||||| | || | |
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| T |
14804738 |
ctttgttgtttcctatttgcattttcaatcgatcttagatcgaattcatctgggactgcatgtgtttttcctttgccctttgatagtgacatggtcttgc |
14804639 |
T |
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| Q |
396 |
attgcttatgaagtttcttgtgtgttaagttacttaccttacttggtacttcttgactctgagatgatgatg |
467 |
Q |
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| T |
14804638 |
attgcttaagatgtttcttgtggttcaagttacctacctttcttggtaattctacactttgagatgatgatg |
14804567 |
T |
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