View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_low_18 (Length: 475)
Name: NF13955_low_18
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_low_18 |
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| [»] scaffold0999 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 13191545 - 13191316
Alignment:
| Q |
17 |
cctatacttttacaacttgatccaatcccttggtgcaaacctcaccgcagtttcagattcaataactcttggctgcttcaacccaaactcactcatcttg |
116 |
Q |
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| T |
13191545 |
cctatacttttacaacttgatccaatcccttggtgcaaacctcaccgc-------gattcaataactcttggctgcttcaacccaaactcactcatcttg |
13191453 |
T |
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| Q |
117 |
ttagaagtaacatggggtcactacccttcttccaatgttattactaaacttaattattgtgcagaagacatttcctcctggagccgagatgctttcccga |
216 |
Q |
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| T |
13191452 |
ttagaagcaacatggggtcactacccttcttccaatcttattactaaacttaattattgtgcagaagacatttcctcctggagccgagacgctttcccga |
13191353 |
T |
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| Q |
217 |
attatcgaaagctcaacaataagcagcgtacccaaat |
253 |
Q |
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| T |
13191352 |
attatcgaaagctcatcaataagcagcgtacccaaat |
13191316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 354
Target Start/End: Original strand, 13131743 - 13131798
Alignment:
| Q |
299 |
ctagtagtgaataccatgttggaaacactcatagattgagtgaaattaacaaatgt |
354 |
Q |
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| T |
13131743 |
ctagtagtgattaccacgtcggaaacactcaaagattgagtgaaattaacatatgt |
13131798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0999 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0999
Description:
Target: scaffold0999; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 301 - 459
Target Start/End: Complemental strand, 731 - 574
Alignment:
| Q |
301 |
agtagtgaataccatgttggaaacactcatagattgagtgaaattaacaaatgtgtaggaatgagttgaaaatgattatggtataagtggtagttctaaa |
400 |
Q |
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| T |
731 |
agtagtgaacaccacgttagaaatactcaaagtttaagtgaaattaacatatgtgtagaaatgagtagaaaatgattatgggatgagtggaatttataaa |
632 |
T |
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| Q |
401 |
cgttgagagtgaatatgaaaaaattatgcactaaactttctcacgttgttggttatttt |
459 |
Q |
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| T |
631 |
cgttgagagtaaatgtg-aaaaattatgcactaaactttctcactttgtttgttatttt |
574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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