View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_low_19 (Length: 472)
Name: NF13955_low_19
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 4573253 - 4573705
Alignment:
| Q |
1 |
tgtcaaagaatatgtaggatgagattaatctagaccaatgtctaacacaagcaatcaaaaatggaagcaccaataaataaagaattagcatgcactgtca |
100 |
Q |
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| T |
4573253 |
tgtcaaagaatatgtaggatgagattaatctagaccaatgtctaacacaagcaatcaaaaatggaagcaccaataaataaagaattagcatgcactgtca |
4573352 |
T |
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| Q |
101 |
ttttatgcagtctaacatttcctatggattgtaatatcgggggtacggtatgttgattatcggattttagaagttaaaaaacaaagaatccaatctttat |
200 |
Q |
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| T |
4573353 |
ttttatgcagtctaacatttcctatggattgtaatatcgggcgtacggtatgttgattatcggattttagaagttaaaaaacaaagaatccaatctctat |
4573452 |
T |
|
| Q |
201 |
ttagcaattgacatttaccaactgcagcattttgtgactgcaatcgatttggaccgataatattgagatgtgtcttgaaatcatatgttgaaagtcggag |
300 |
Q |
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| T |
4573453 |
ttagcaattgacatttaccaactgcagcattttgtgactgcaatcgatttggaccgataatattgagatgtgtcttgaaatcatatgttgaatgtcggag |
4573552 |
T |
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| Q |
301 |
aaatatgacggcgttttgtcccatgctctaggcgtagggactgctgcgctaggtgcggctgtgttgatgtttc---aagatctgtttctaccagctgcgc |
397 |
Q |
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| T |
4573553 |
aaatatgacggcgttttgtcc-----------cgtagggactgctgcgctaggtgcggctgtgttgatgtttcaagaagatctgtttctacaagctgcgc |
4573641 |
T |
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| Q |
398 |
tagacacatgagcaagctgcgtgaaacgcatagatttatgtggagctacactgggtgcagagga |
461 |
Q |
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| T |
4573642 |
tagacacacgagcaagctgcgtgaaacgcatagatttatgtggagctacactgggtgcagagga |
4573705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 4592224 - 4592264
Alignment:
| Q |
1 |
tgtcaaagaatatgtaggatgagattaatctagaccaatgt |
41 |
Q |
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| T |
4592224 |
tgtcaaagaatatgtagaatgagattaatctagaccaatgt |
4592264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4584480 - 4584514
Alignment:
| Q |
1 |
tgtcaaagaatatgtaggatgagattaatctagac |
35 |
Q |
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| T |
4584480 |
tgtcaaagaatatgtagaatgagattaatctagac |
4584514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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