View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13955_low_2 (Length: 688)

Name: NF13955_low_2
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13955_low_2
NF13955_low_2
[»] chr4 (1 HSPs)
chr4 (20-684)||(35744952-35745628)


Alignment Details
Target: chr4 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 20 - 684
Target Start/End: Original strand, 35744952 - 35745628
Alignment:
Q  20 agaagtaggccacagcctagtataaaataaatgtccacatttagattttcaggatgctaagatttcagtaattatcataattagaataatttcatttcag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35744952 agaagtaggccacagcctagtataaaataaatgtccacatttagattttcaggatgctaagatttcagtaattatcataattagaataatttcatttcag 35745051  T
Q  120 gtgcagcttatttaatgttgaaactataattacctgatcaatagacttgtcctcaatctttgacagttgagtttttgttatgatctctggatatagcctt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35745052 gtgcagcttatttaatgttgaaactataattacctgatcaatagacttgtcctcaatctttgacacttgagtttttgttatgatctctggatatagcctt 35745151  T
Q  220 tgtagatcattcagtgttctcataactatctgcaatgtgacatatnnnnnnnnnnnnnnnccaagaataatgattgtcattttacaacagatcaggaaac 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||   ||||||    
T  35745152 tgtagatcattcagtgttctcataactatctgcaatgtgacatataaaaaaaaaaaa---ccaagaataatgattgtcattttacaacaga---ggaaac 35745245  T
Q  320 tgaaatctgtcacttaatgttacgaagttaaactcttattatgtcacatacctcgcgcaaggaagcagaactgttacatggagctaagtccatgatatct 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35745246 tgaaatctgtcacttaatgttacgaagttaaactcttattatgtcacatacctcgcgcaaggaagcagaactgttacatggagctaagtccatgatatct 35745345  T
Q  420 ctgaatgccatgatcttcgtatgaatctctaccattaaaatcaattggtctgctcctacgaatgataactccattgactctccattttctttgctctgag 519  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35745346 ctgaatgccatgatcttcatatgaatctctaccattaaaatcaattggtctgctcctacgaatgataactccattgactctccattttctttgctctgag 35745445  T
Q  520 cctttg------------------aagacttcttaggtgtgctagagccttttatcactttcagtccctgcaagtgcttatataatatcaattaatagtg 601  Q
    ||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35745446 cctttgaagacttcttaggtgtgcaagacttcttaggtgtgctagagccttttatcactttcagtccctgcaagtgcttatataatatcaattaatagtg 35745545  T
Q  602 cctaggatatctcagatagataggtaatgctagacttccaacatcttctgcatgtcttgtctttcaatgttattcatctcact 684  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35745546 cctaggatatctcagatagataggtaatgctaagcttccaacatcttctgcatgtcttgtctttcaatgttattcatgtcact 35745628  T

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