View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_low_26 (Length: 442)
Name: NF13955_low_26
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 44680778 - 44680364
Alignment:
| Q |
18 |
agatatggcgttggagggggttccatttcagcaacttgtccgtatgcccatattctccgaggtttctgaagagcttatagaagaccagtatctagctgta |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44680778 |
agatgtggcgttggagggggttccatttcagcaacttgtccgtatgcccatattctccgaggtttctgaagagcttatagaagaccagtatctagctgta |
44680679 |
T |
|
| Q |
118 |
gaggatttccttcacgcggttatcattggtctctggcgtactttttggcataaaagtggaccactaccgttatgtgtctcatgtccctcttatcctggtt |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44680678 |
gaggatttccttcatgcggttatcattggtctctggcgtactttttggcataaaagtggaccactaccgttatgtgtctcatgtccctcttatcctggtt |
44680579 |
T |
|
| Q |
218 |
caaagttcaatagtgttgaaaaagcaatatcaaggggcaggctaagggaaatgcgtggtttaggtttgatatcaaaagcatcaactgattcaaaaattaa |
317 |
Q |
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| T |
44680578 |
caaagttcaatagtgttgaaaaagcaatatcaaggggcaggctaagggaaatgcgtggtttaggtttgatatcaaaagcatcaactgattcaaaaattaa |
44680479 |
T |
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| Q |
318 |
atgggatcaagtggttgagtttgccatattcaagccagaattattgtcggacaatgctttgagagtatcagccaacactatttgtgaagctctcttttac |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44680478 |
atgggatcaagtggttgagtttgccatattcaagccagaattattgttggacaatgctttgagagtatcagccaacactatttgtgaagctctcttttac |
44680379 |
T |
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| Q |
418 |
ggttttcatgttctt |
432 |
Q |
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| T |
44680378 |
ggttttcatgttctt |
44680364 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 394
Target Start/End: Complemental strand, 2791044 - 2790995
Alignment:
| Q |
345 |
attcaagccagaattattgtcggacaatgctttgagagtatcagccaaca |
394 |
Q |
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| T |
2791044 |
attcaagccagaaatattcttggacaatagtttgagagtatcagccaaca |
2790995 |
T |
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