View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13955_low_3 (Length: 669)

Name: NF13955_low_3
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13955_low_3
NF13955_low_3
[»] chr6 (3 HSPs)
chr6 (434-650)||(8046098-8046314)
chr6 (2-224)||(8044941-8045163)
chr6 (284-438)||(8045258-8045410)
[»] chr3 (2 HSPs)
chr3 (67-125)||(44218958-44219016)
chr3 (69-123)||(47684868-47684922)
[»] chr7 (2 HSPs)
chr7 (74-133)||(27234634-27234693)
chr7 (67-127)||(39143595-39143655)
[»] chr4 (2 HSPs)
chr4 (67-132)||(25902378-25902443)
chr4 (67-113)||(46958845-46958891)
[»] chr2 (1 HSPs)
chr2 (74-134)||(19031896-19031956)
[»] chr1 (1 HSPs)
chr1 (69-125)||(29225329-29225385)
[»] chr5 (1 HSPs)
chr5 (67-125)||(39212479-39212537)


Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 434 - 650
Target Start/End: Original strand, 8046098 - 8046314
Alignment:
Q  434 tacctaattatgcataattagatcaaatgcatatgtttttctaatttatgttggatatgctaaaacacagggaataacttgattagtaatattaaatttt 533  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8046098 tacctaattatgcataattagatcaaatgcatatgtttttctaatttatgttggatatgctaaaacacagggaataacttgattagtgatattaaatttt 8046197  T
Q  534 tcatcaattcctaaatcaaatattagtagcaagactgaacctaatagagtcctttgcgacacccccacacttgtaggacattcaaagttaaatgagcaat 633  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8046198 tcatcaattcctaaatcaaatattagtagcaagactgaacctaatacaatcctttgcgacacccccacacttgtaggacattcaaagttaaatgagcaat 8046297  T
Q  634 attttcaaccacattgc 650  Q
    |||||||||||||||||    
T  8046298 attttcaaccacattgc 8046314  T

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Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 8044941 - 8045163
Alignment:
Q  2 gcattcattttagtccaaactaattttcataatttgattgaaagtatttaattttagcccgaaactatacactttttcttaatatgtttgaaacgaacaa 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8044941 gcattcattttagtccaaactaattttcataatttgattgaaagtatttaattttagcccgaaattatacactttttcttaatatgtttgaaacgaacaa 8045040  T
Q  102 aagactaagttattatgggacggatgaagtattcagttttccttctttttcttgttgttgccttctttgcaattgtcgaatgatttcttttgatttcgat 201  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  8045041 aagactaagttattatgggatggatgaagtattcaattttccttctttttcttgttgttgcctgctttgcaattgtcgaatgatttcttttgattttgat 8045140  T
Q  202 aatgatgcgtgttaagtttttat 224  Q
    |||||||||||||||||||||||    
T  8045141 aatgatgcgtgttaagtttttat 8045163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 284 - 438
Target Start/End: Original strand, 8045258 - 8045410
Alignment:
Q  284 aatgtcaccgaagtgcgaccccatttggtatcannnnnnn-ctgcaaacaacaacattaccaaattttactcatatgactaaaaccaaatgtttaccgaa 382  Q
    |||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||| |||||||||||||||||  | |||| | ||  |     
T  8045258 aatgtcaccgaagtgctaccccatttggtatcattttttttctgcaaacaacaacattaccaaatgttactcatatgactaaagaccaatgat-ac--at 8045354  T
Q  383 gtgcactttgatgttgtgattggttacattatttatgaataaattggattgtacct 438  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8045355 gtgcactttgatgttgtgattggttacattatttatgaatatattggattgtacct 8045410  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 44219016 - 44218958
Alignment:
Q  67 tatacactttttcttaatatgtttgaaacgaacaaaagactaagttattatgggacgga 125  Q
    |||||||||||||||||||||| ||||| ||||||||||||  ||||||||||||||||    
T  44219016 tatacactttttcttaatatgtgtgaaatgaacaaaagactgggttattatgggacgga 44218958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 47684868 - 47684922
Alignment:
Q  69 tacactttttcttaatatgtttgaaacgaacaaaagactaagttattatgggacg 123  Q
    ||||| |||||||||||||| ||||| ||||||||||||  ||||||||||||||    
T  47684868 tacaccttttcttaatatgtgtgaaatgaacaaaagactcggttattatgggacg 47684922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 27234634 - 27234693
Alignment:
Q  74 tttttcttaatatgtttgaaacgaacaaaagactaagttattatgggacggatgaagtat 133  Q
    ||||||||||||||| ||||| ||||||| |||| ||||| |||| ||||||||||||||    
T  27234634 tttttcttaatatgtgtgaaatgaacaaatgactcagttaatatgagacggatgaagtat 27234693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 39143655 - 39143595
Alignment:
Q  67 tatacactttttcttaatatgtttgaaacgaacaaaagactaagttattatgggacggatg 127  Q
    ||||||||||||||| ||| || ||||| || ||||||||| | |||| ||||||||||||    
T  39143655 tatacactttttctttatacgtgtgaaatgagcaaaagactcacttataatgggacggatg 39143595  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 25902443 - 25902378
Alignment:
Q  67 tatacactttttcttaatatgtttgaaacgaacaaaagactaagttattatgggacggatgaagta 132  Q
    |||||||||||||||||||||| ||||| ||  ||||  || ||||||||||||||||| ||||||    
T  25902443 tatacactttttcttaatatgtgtgaaatgaggaaaatgctcagttattatgggacggaggaagta 25902378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 46958845 - 46958891
Alignment:
Q  67 tatacactttttcttaatatgtttgaaacgaacaaaagactaagtta 113  Q
    |||||||||||||||||||||| ||||| |||||||| ||| |||||    
T  46958845 tatacactttttcttaatatgtgtgaaatgaacaaaatactcagtta 46958891  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 19031896 - 19031956
Alignment:
Q  74 tttttcttaatatgtttgaaacgaacaaaagactaagttattatgggacggatgaagtatt 134  Q
    ||||||||||||||| ||||| |||||||||| | | ||||||||  ||||||||||||||    
T  19031896 tttttcttaatatgtgtgaaatgaacaaaagatttacttattatgaaacggatgaagtatt 19031956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 29225385 - 29225329
Alignment:
Q  69 tacactttttcttaatatgtttgaaacgaacaaaagactaagttattatgggacgga 125  Q
    |||||||||||||||||||| ||||| || ||||||||| | |||| ||||||||||    
T  29225385 tacactttttcttaatatgtgtgaaatgagcaaaagactcaattataatgggacgga 29225329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 39212537 - 39212479
Alignment:
Q  67 tatacactttttcttaatatgtttgaaacgaacaaaagactaagttattatgggacgga 125  Q
    |||||| ||||||||||||||  ||||| |||||||||||   ||||||||||||||||    
T  39212537 tatacaatttttcttaatatgcgtgaaatgaacaaaagacatggttattatgggacgga 39212479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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