View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13955_low_33 (Length: 417)
Name: NF13955_low_33
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_low_33 |
 | |
|
| [»] scaffold0653 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 28599926 - 28600338
Alignment:
| Q |
1 |
tactatgttcatttgattttattatattgattcaaattgagttactcttgtatattctataggtcacttggattgaacatttggagatcgaagacaaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28599926 |
tactatgttcatttgattttattatattgattcatattgagttactcttgtatattttataggtcacttggattgaacacttggagatcgaagacaaaaa |
28600025 |
T |
|
| Q |
101 |
tccagttcataggttttatcgaaatgctatctatagtggagctgcatttggagctgaaagatggctcactactcttcagaggatgtgtgaaaggcttgct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28600026 |
tccagttcataggttttatcgaaatgctatctatagtggagctgcatttggagctgaaagatggctcactactcttcagaggatgtgtgaaaggattgct |
28600125 |
T |
|
| Q |
201 |
tgttcaatggtttcagccacccgtgatctcggcggaggtatatacacataattaatattaatatttacatggtatagttttaagtattgcactcttcaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28600126 |
tgttcaatggtttcagccacccgtgatctcggtggaggtatatacacataattaatattaatattcacatggtatagttttaagtattgcactcttcaat |
28600225 |
T |
|
| Q |
301 |
cgccattgcgaccataatataacagtttttggcttttagctgcatcagcaactataattatggttgcattgttcgcatttgcctgcatttaactgtaaga |
400 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28600226 |
cgccattgcgatcataatataacagtttttggcttttagctgcatcagcaactataattatggttgcattgttcgcatttgcctgcatttaactgtaaga |
28600325 |
T |
|
| Q |
401 |
taaaagttcatct |
413 |
Q |
| |
|
||||||||||||| |
|
|
| T |
28600326 |
taaaagttcatct |
28600338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 58 - 201
Target Start/End: Original strand, 2136 - 2279
Alignment:
| Q |
58 |
tataggtcacttggattgaacatttggagatcgaagacaaaaatccagttcataggttttatcgaaatgctatctatagtggagctgcatttggagctga |
157 |
Q |
| |
|
||||||| ||||||||||||||| | || | ||||||| |||||||||||||| | | ||| |||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
2136 |
tataggttacttggattgaacatgttgaagttgaagacagaaatccagttcatatgctctatagaaatgttatctatagtggagttgcatttggagctga |
2235 |
T |
|
| Q |
158 |
aagatggctcactactcttcagaggatgtgtgaaaggcttgctt |
201 |
Q |
| |
|
|| |||||||||||| ||||| | |||||||||||| |||||| |
|
|
| T |
2236 |
aaaatggctcactacacttcaaataatgtgtgaaaggattgctt |
2279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 58 - 201
Target Start/End: Original strand, 9276719 - 9276862
Alignment:
| Q |
58 |
tataggtcacttggattgaacatttggagatcgaagacaaaaatccagttcataggttttatcgaaatgctatctatagtggagctgcatttggagctga |
157 |
Q |
| |
|
||||||| ||||||||||||||| | || | ||||||| |||||||||||||| | | ||| |||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
9276719 |
tataggttacttggattgaacatgttgaagttgaagacagaaatccagttcatatgctctatagaaatgttatctatagtggagttgcatttggagctga |
9276818 |
T |
|
| Q |
158 |
aagatggctcactactcttcagaggatgtgtgaaaggcttgctt |
201 |
Q |
| |
|
|| |||||||||||| ||||| | |||||||||||| |||||| |
|
|
| T |
9276819 |
aaaatggctcactacacttcaaataatgtgtgaaaggattgctt |
9276862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 58 - 201
Target Start/End: Original strand, 9294371 - 9294514
Alignment:
| Q |
58 |
tataggtcacttggattgaacatttggagatcgaagacaaaaatccagttcataggttttatcgaaatgctatctatagtggagctgcatttggagctga |
157 |
Q |
| |
|
||||||| ||||||||||||||| | || | ||||||| |||||||||||||| | | ||| |||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
9294371 |
tataggttacttggattgaacatgttgaagttgaagacagaaatccagttcatatgctctatagaaatgttatctatagtggagttgcatttggagctga |
9294470 |
T |
|
| Q |
158 |
aagatggctcactactcttcagaggatgtgtgaaaggcttgctt |
201 |
Q |
| |
|
|| |||||||||||| ||||| | |||||||||||| |||||| |
|
|
| T |
9294471 |
aaaatggctcactacacttcaaataatgtgtgaaaggattgctt |
9294514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University