View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13955_low_38 (Length: 380)
Name: NF13955_low_38
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_low_38 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 9 - 376
Target Start/End: Complemental strand, 3830118 - 3829754
Alignment:
| Q |
9 |
tccttggctgaatcaaactttcttgtatatcatgaaaaaatccgacaaagggagagtctaactcaatcgttccaattttttgttgtattgcaaaattaag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3830118 |
tccttggctgaatcaaactttcttgtatatcatgaaaaaatctgacaaagggagagtctaactcaatcgttccaattttttgttgtattgcaaaattaag |
3830019 |
T |
|
| Q |
109 |
tggcaaacccggaagtcttgggactccaggtcttgtatacgcctaacctttttattcgcaccagccaagcactaatcatgctaccattaacaaaactcta |
208 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3830018 |
tggcaaacccggaagtcttgggactccgggtcttgtatacgcctaacctttttattcgcaccagccaagcactaatcatgctaccattaacaaaactcta |
3829919 |
T |
|
| Q |
209 |
acataaacccccacgaataaactaccttggaatcccagaaaatctcaatttgaaaaatattcattttgacgagtcaagcaggtactcagatgcacactat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3829918 |
acataaacccccacgaataaactaccttggaatcccagaaaatctcaatttgaaaaatattcattttgacgagtcaagcaggtactcagatgcacactat |
3829819 |
T |
|
| Q |
309 |
actctccattgctannnnnnnnnaaccaatataataggatatttttatagagtgatgccacttctgtg |
376 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
3829818 |
actctccattgcta-ttttttttaacca--ataataggatatttttatatagtgatgccacttttgtg |
3829754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University