View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_low_39 (Length: 377)
Name: NF13955_low_39
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 14 - 361
Target Start/End: Complemental strand, 34796611 - 34796263
Alignment:
| Q |
14 |
gaaaaatgagaatatgaatgtgtgtgtgtaannnnnnnn-aagtaaaaatatatataaagttaatcataacatgtgttactaagcagaactttcaaccaa |
112 |
Q |
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| T |
34796611 |
gaaaaatgtgaatatgaatgtgtgtgtgtaaattttttttaagtaacaatatatataaagttaatcatagcatgtgttactaagcagaactttcaaccaa |
34796512 |
T |
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| Q |
113 |
tataagattttaagttactctagtaaaaaacaggagaaaacacttttcaagtttatatagtcttaaaaagaaactagggtttgatcatcatcaaggcaag |
212 |
Q |
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| T |
34796511 |
tataagattttaagttactctagtaaaaaacaggagaaaacacttttcaagtttatatagtcttaaaaagaaactagggtttgatcatcatcaaggcaag |
34796412 |
T |
|
| Q |
213 |
agctttctataacaatgttcaatagcagaagnnnnnnnggattttctatttttcatcagtaacaaactcttcctctttatcaacatagaaatcattaaac |
312 |
Q |
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| T |
34796411 |
agctttctataacaatgttcaatagcagaagaaaaaaaggattttctatttttcatcagtaacaaactcttcctctttatcaacatagaaatcattaaac |
34796312 |
T |
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| Q |
313 |
ttttcaagttattgattaagaaaccaagcttgctctaagtggcagaaag |
361 |
Q |
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| T |
34796311 |
ttttcaagttattgattaagaaaccaagcttgctctaagtggcagaaag |
34796263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 272 - 334
Target Start/End: Complemental strand, 32696224 - 32696162
Alignment:
| Q |
272 |
taacaaactcttcctctttatcaacatagaaatcattaaacttttcaagttattgattaagaa |
334 |
Q |
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| T |
32696224 |
taacaaattcttcctctttgtcaacgtagaaatcattgaacttttcaagctcttgattaagaa |
32696162 |
T |
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