View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13955_low_4 (Length: 657)
Name: NF13955_low_4
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 616; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 1 - 639
Target Start/End: Original strand, 2133836 - 2134475
Alignment:
| Q |
1 |
aaagttctggagaaaagccgtcaccgcaactgcttatattctaaacaaatgtattaccgagaagctaaaattaaaggtacccgaggaagcatagagtgga |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2133836 |
aaagttctggagaaaagtcgtcaccgcaactgcttatattctaaacaaatgtattaccgagaagctaaaattaaaggtacccgaggaagcatagagtgga |
2133935 |
T |
|
| Q |
101 |
agaaaatcaagtgtgaagcatctaagggtgtttgggttagtgtgtttcaaggagatacctgatgctaggaggatgttagaagataaaagtgaaagcatgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2133936 |
agaaaatcaagtgtgaagcatctaagggtgtttgggttagtgtgtttcaaggagatacctgatgctaggaggatgttagaagataaaagtgaaagcatgg |
2134035 |
T |
|
| Q |
201 |
agctcatatggtatcattcaactggtgtctatatgttgtatataaggctagtcataccattgaaagaaattggagtagaaaccaactcttgcaagtaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2134036 |
agctcatatggtatcattcaactggtgtctatatgttgtatataaggctagtcataccattgaaagaaattggagtagaaaccaactcttgcaagtaaaa |
2134135 |
T |
|
| Q |
301 |
tgcccattgaaattaggcttgtgataccatagctggttgttcctaataatgtgttttgccaaagcacttaatgttgaatgaggccacccaagatttaatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2134136 |
tgcccattgaaattaggcttgtgataccatagctggttattcctaataatgtgttttgccaaagcacttaatgttgaatgaggccacccaagatttaatt |
2134235 |
T |
|
| Q |
401 |
atcatacctaatatagtactcacaaattttgtgacaatttgatatttaaaacagaattgacaaaatggtggtcgtgtgcaagtagtggcatatttaaatt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2134236 |
atcatacctaatatagtactcacaaattttgtgacaatttgatatttaaaacagaattgacaaaatggtggtcgtctgcaagtagtggcatatttaaatt |
2134335 |
T |
|
| Q |
501 |
gacaaaattgtaagcaacatttaacattttag-ccccaatatgctaaattgctgtgtagatgccaatagtttgagaagatgatccttaatcatctaaacg |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2134336 |
gacaaaattgtaagcaacatttaacattttagcccccaatatgctaaattgttgtgtagatgccaatagtttgagaagatgatccttaatcatctaaacg |
2134435 |
T |
|
| Q |
600 |
ctcttcttcaacttgaccaactacaaaagttaagataaaa |
639 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2134436 |
ctcttcttcaacttgaccaactacaaaagttaagataaaa |
2134475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 255 - 458
Target Start/End: Complemental strand, 2073286 - 2073081
Alignment:
| Q |
255 |
taccattgaaagaaattggagtagaaaccaactcttgcaagtaaaatgcccattgaaattaggcttgtgataccatagctggttgttcctaataatgtgt |
354 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2073286 |
taccattgaaagtaattggagtagaaaccaactcttgtaagtaaaatgtccattgaaattaggattgtgataccatagctggttgttcctaataatgtgt |
2073187 |
T |
|
| Q |
355 |
tttgccaaagcacttaatgttgaatgaggccacccaagatttaattatcatacctaatatagtact--cacaaattttgtgacaatttgatatttaaaac |
452 |
Q |
| |
|
||| | |||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2073186 |
tttccgaaagcacttaatgttgaatgagtccacctaagatttaattatcatacctactatagtactcacacaaattttgtgacaatttgatatttaaaac |
2073087 |
T |
|
| Q |
453 |
agaatt |
458 |
Q |
| |
|
| |||| |
|
|
| T |
2073086 |
aaaatt |
2073081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 593 - 641
Target Start/End: Complemental strand, 2066254 - 2066205
Alignment:
| Q |
593 |
ctaaacgctcttcttcaacttgaccaactacaaaa-gttaagataaaaat |
641 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||| |||||||||||||| |
|
|
| T |
2066254 |
ctaaacgctcttcttcaacatgaccatctacaaaaggttaagataaaaat |
2066205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University