View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13955_low_40 (Length: 367)
Name: NF13955_low_40
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13955_low_40 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 89 - 367
Target Start/End: Complemental strand, 227087 - 226807
Alignment:
| Q |
89 |
tataaggaagctaataaagagatgaagaagccggtggacgaagtaaaaactaaattttttgatgggttataccaaatttttatatnnnnnnnn--ggatc |
186 |
Q |
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| T |
227087 |
tataaggaagctaagaaagagatgaagaagccggtggacgaagtaaaaactaaattttttgatgggttataccaaatttttatataaaaaaaaaaggatc |
226988 |
T |
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| Q |
187 |
gaggaaggaaatttattttatgaatgaagattataccaatggtcattttaacaactgtttttaaggggatttgaactcaatactttgacatgttatatca |
286 |
Q |
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| T |
226987 |
gagtaaggaaatttattttattaatgaagattataccaatggtcattttaacaactctttttaaggggatttgaactcaatactttgacatgttacatca |
226888 |
T |
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| Q |
287 |
atctttaggcttcaaggagacaaatctataatataagctaggtagggggtgagaaataagaacaatagacttgaacaaagt |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
226887 |
atctttaggcttcaaggagacaaatctataatataagctaggtagggggtgagaaataagaacaatagacttgaacaaagt |
226807 |
T |
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