View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13955_low_42 (Length: 364)

Name: NF13955_low_42
Description: NF13955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13955_low_42
NF13955_low_42
[»] chr6 (6 HSPs)
chr6 (12-346)||(12300591-12300924)
chr6 (7-327)||(14613118-14613437)
chr6 (32-198)||(28559857-28560022)
chr6 (282-346)||(28559759-28559823)
chr6 (164-271)||(6342070-6342177)
chr6 (36-198)||(34066709-34066870)
[»] chr7 (1 HSPs)
chr7 (7-345)||(19653204-19653541)
[»] scaffold0257 (1 HSPs)
scaffold0257 (12-345)||(13545-13877)
[»] chr4 (3 HSPs)
chr4 (27-346)||(19034323-19034640)
chr4 (36-186)||(16986511-16986660)
chr4 (121-179)||(22177195-22177253)
[»] chr5 (3 HSPs)
chr5 (40-316)||(26466981-26467256)
chr5 (258-346)||(30583993-30584081)
chr5 (164-198)||(23957080-23957114)
[»] chr2 (2 HSPs)
chr2 (36-204)||(21809294-21809461)
chr2 (164-271)||(28017099-28017206)
[»] scaffold0138 (1 HSPs)
scaffold0138 (40-146)||(15882-15987)
[»] scaffold1416 (1 HSPs)
scaffold1416 (164-271)||(1561-1668)
[»] chr3 (4 HSPs)
chr3 (84-270)||(4646270-4646455)
chr3 (121-179)||(12285269-12285327)
chr3 (121-179)||(19586964-19587022)
chr3 (167-199)||(23376896-23376928)
[»] scaffold0329 (1 HSPs)
scaffold0329 (121-179)||(10978-11036)
[»] chr1 (3 HSPs)
chr1 (121-179)||(52777649-52777707)
chr1 (157-185)||(30756266-30756294)
chr1 (157-185)||(30763718-30763746)


Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 12 - 346
Target Start/End: Complemental strand, 12300924 - 12300591
Alignment:
Q  12 atgaaattgtgttttaatgagagaaatgaaatttttgacatactgagaaacttcagacttagattttaaaagaacaatccaaacaaatccacaataatca 111  Q
    |||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12300924 atgaaattgtgtttcaatgagagaaatgaaattttggacataatgagaaacttcagacttagattttaaaagaataatccaaacaaatccacaataatca 12300825  T
Q  112 tcaattatgagtaagaaagtatctatgattatgtacatatgtagtagataagggaccccaaatatcaaagtgtaaaagttcaaatttgctagattcaata 211  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  12300824 tcaattatg-gtaagaaagtatctatgattatgtacatatgtagtagataaggaaccccaaatatcaaagtgtaaaagttcaaatttgctatattcaata 12300726  T
Q  212 gatagactagaagtaaaaggtaatttcttttgtttagaaaaatgacatatctcacaagtaccattgtgatcaaaagtaagactaggataaatttgagaca 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12300725 gatagactagaagtaaaaggtaatttcttttgtttagaaaaatgacatatgtcacaagtaccattgtgatcaaaagtaagactacgataaatttgagaca 12300626  T
Q  312 tgtgagataatctcttatgagatacatgacctaac 346  Q
    |||||||||||||||||||||||||||||||||||    
T  12300625 tgtgagataatctcttatgagatacatgacctaac 12300591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 7 - 327
Target Start/End: Complemental strand, 14613437 - 14613118
Alignment:
Q  7 gtgagatgaaattgtgttttaatgagagaaatgaaatttttgacatactgagaaacttcagacttagattttaaaagaacaatccaaacaaatccacaat 106  Q
    |||| ||||||||| |||| ||||||| ||||||| ||||| ||||  |||||||||||||| || |||||||||||||||||||||||||||| ||  |    
T  14613437 gtgatatgaaattgagtttcaatgagacaaatgaagtttttaacatgttgagaaacttcagattttgattttaaaagaacaatccaaacaaatctactgt 14613338  T
Q  107 aatcatcaattatgagtaagaaagtatctatgattatgtacatatgtagtagataagggaccccaaatatcaaagtgtaaaagttcaaatttgctagatt 206  Q
    |||||||||  ||| || ||||| |||||||||||||||||||| | ||| ||||  ||||||||||||||||| || ||||| | |||||| ||||       
T  14613337 aatcatcaagaatg-gtgagaaaatatctatgattatgtacataagcagtggatagaggaccccaaatatcaaaatgcaaaagctgaaatttactagtgg 14613239  T
Q  207 caatagatagactagaagtaaaaggtaatttcttttgtttagaaaaatgacatatctcacaagtaccattgtgatcaaaagtaagactaggataaatttg 306  Q
    ||| ||| | |||||||| |||||||||| |||||||||| | |||||||||||| ||||||||| |||    | ||||||| ||||||||||||| |||    
T  14613238 caacagacaaactagaaggaaaaggtaatatcttttgtttggcaaaatgacatatatcacaagtagcatgagaaacaaaagtgagactaggataaagttg 14613139  T
Q  307 agacatgtgagataatctctt 327  Q
    |||||| || || ||||||||    
T  14613138 agacatatgggacaatctctt 14613118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 28560022 - 28559857
Alignment:
Q  32 gagaaatgaaatttttgacatactgagaaacttcagacttagattttaaaagaacaatccaaacaaatccacaataatcatcaattatgagtaagaaagt 131  Q
    ||||||||||  |||||||||   ||||||||||| ||||| ||||||| ||||||||||||||||||| || ||||| ||||| ||||| |||| || |    
T  28560022 gagaaatgaagattttgacatgtagagaaacttcaaacttatattttaagagaacaatccaaacaaatctactataattatcaagtatga-taaggaaat 28559924  T
Q  132 atctatgattatgtacatatgtagtagataagggaccccaaatatcaaagtgtaaaagttcaaattt 198  Q
    ||||||||||||||||| | ||||| || || ||||||||||||||||| |||||||||||||||||    
T  28559923 atctatgattatgtacagaagtagtggacaaaggaccccaaatatcaaactgtaaaagttcaaattt 28559857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 282 - 346
Target Start/End: Complemental strand, 28559823 - 28559759
Alignment:
Q  282 caaaagtaagactaggataaatttgagacatgtgagataatctcttatgagatacatgacctaac 346  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28559823 caaaagtaatactaggataaatttgagacatatgagataatctcttatgagatacatgacctaac 28559759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 271
Target Start/End: Complemental strand, 6342177 - 6342070
Alignment:
Q  164 ggaccccaaatatcaaagtgtaaaagttcaaatttgctagattcaatagatagactagaagtaaaaggtaatttcttttgtttagaaaaatgacatatct 263  Q
    |||||||||||||||| ||||||||||||||||||   |    |||||||| |||| |||  | ||||||||||  |||| |||| |||||||||||| |    
T  6342177 ggaccccaaatatcaaggtgtaaaagttcaaatttagaactagcaatagattgactggaatgataaggtaattttctttgcttagcaaaatgacatatgt 6342078  T
Q  264 cacaagta 271  Q
    ||||||||    
T  6342077 cacaagta 6342070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 198
Target Start/End: Complemental strand, 34066870 - 34066709
Alignment:
Q  36 aatgaaatttttgacatactgagaaacttcagacttagattttaaaagaacaatccaaacaaatccacaataatcatcaattatgagtaagaaagtatct 135  Q
    |||||| ||||||||||  || || ||||||||||||   ||||| | ||||||||||||||||| || ||| |||||||  || ||| ||||| |||||    
T  34066870 aatgaagtttttgacatgttgtgatacttcagacttattctttaacaaaacaatccaaacaaatctactatagtcatcaaggat-agtgagaaaatatct 34066772  T
Q  136 atgattatgtacatatgtagtagataagggaccccaaatatcaaagtgtaaaagttcaaattt 198  Q
     |||||||| | | | | | | || || || |||||||||||||||||||| | |||||||||    
T  34066771 gtgattatgcatagaaggaatggacaaagggccccaaatatcaaagtgtaacaattcaaattt 34066709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 7 - 345
Target Start/End: Complemental strand, 19653541 - 19653204
Alignment:
Q  7 gtgagatgaaattgtgttttaatgagagaaatgaaatttttgacatactgagaaacttcagacttagattttaaaagaacaatccaaacaaatccacaat 106  Q
    |||| ||||||||| |||| ||||||| ||||||| ||||| ||||  |||||||||||||| || |||||||||||||||||||||||||||| ||  |    
T  19653541 gtgatatgaaattgagtttcaatgagacaaatgaagtttttaacatgttgagaaacttcagattttgattttaaaagaacaatccaaacaaatctactgt 19653442  T
Q  107 aatcatcaattatgagtaagaaagtatctatgattatgtacatatgtagtagataagggaccccaaatatcaaagtgtaaaagttcaaatttgctagatt 206  Q
    |||||||||  ||| || ||||| |||||||| ||||||||| | | ||| || || ||||||||||||||||| || ||||| | |||||| ||||       
T  19653441 aatcatcaagaatg-gtgagaaaatatctatggttatgtacagaagcagtggacaaaggaccccaaatatcaaaatgcaaaagctgaaatttactagtag 19653343  T
Q  207 caatagatagactagaagtaaaaggtaatttcttttgtttagaaaaatgacatatctcacaagtaccattgtgatcaaaagtaagactaggataaatttg 306  Q
    ||| ||| | |||||||| ||||||||||||||||||||| | |||||||||||| ||||||||| ||| |  ||||||||| ||||| ||||| | |||    
T  19653342 caacagacaaactagaagaaaaaggtaatttcttttgtttggcaaaatgacatatgtcacaagtagcatgggaatcaaaagtgagactgggatagagttg 19653243  T
Q  307 agacatgtgagataatctcttatgagatacatgacctaa 345  Q
    |||||| ||||| |||||||||||||| |||||||||||    
T  19653242 agacatatgagacaatctcttatgagagacatgacctaa 19653204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 12 - 345
Target Start/End: Complemental strand, 13877 - 13545
Alignment:
Q  12 atgaaattgtgttttaatgagagaaatgaaatttttgacatactgagaaacttcagacttagattttaaaagaacaatccaaacaaatccacaataatca 111  Q
    ||||||||| |||| ||||||| ||||||| ||||| ||||  |||||||||||||| || |||||||||||||||||||||||||||| ||  ||||||    
T  13877 atgaaattgagtttcaatgagacaaatgaagtttttaacatgttgagaaacttcagattttgattttaaaagaacaatccaaacaaatctactgtaatca 13778  T
Q  112 tcaattatgagtaagaaagtatctatgattatgtacatatgtagtagataagggaccccaaatatcaaagtgtaaaagttcaaatttgctagattcaata 211  Q
    ||||  ||| || ||||| |||||||| ||||||||| | | ||| || || ||||||||||||||||| || ||||| | |||||| ||||   ||| |    
T  13777 tcaagaatg-gtgagaaaatatctatggttatgtacagaagcagtggacaaaggaccccaaatatcaaaatgcaaaagctgaaatttactagtagcaaca 13679  T
Q  212 gatagactagaagtaaaaggtaatttcttttgtttagaaaaatgacatatctcacaagtaccattgtgatcaaaagtaagactaggataaatttgagaca 311  Q
    || | |||||||| ||||||||||||||||||||| | |||||||||||| ||||||||| ||| |  ||||||||| ||||| ||||| | ||||||||    
T  13678 gacaaactagaagaaaaaggtaatttcttttgtttggcaaaatgacatatgtcacaagtagcatgggaatcaaaagtgagactgggatagagttgagaca 13579  T
Q  312 tgtgagataatctcttatgagatacatgacctaa 345  Q
    | ||||| |||||||||||||| |||||||||||    
T  13578 tatgagacaatctcttatgagagacatgacctaa 13545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 27 - 346
Target Start/End: Complemental strand, 19034640 - 19034323
Alignment:
Q  27 aatgagagaaatgaaatttttgacatactgagaaacttcagacttagattttaaaagaacaatccaaacaaatccacaataatcatcaattatgagtaag 126  Q
    |||||| |||||||||||||||||||  ||||| ||||||||||| |||||||| ||||||||||||||||||  ||  |||||||||| |||| |||||    
T  19034640 aatgagggaaatgaaatttttgacatgttgagatacttcagacttggattttaatagaacaatccaaacaaatatactgtaatcatcaagtatg-gtaag 19034542  T
Q  127 aaagtatctatgattatgtacatatgtagtagataagggaccccaaatatcaaagtgtaaaagttcaaatttgctagattcaatagatagactagaagta 226  Q
    ||| ||| |||||||||||||| |  || | |||||  |||||||||||||||| || |||||| |||| ||||||||   || ||| | |||||||||     
T  19034541 aaattatttatgattatgtacagaaataatggataa-agaccccaaatatcaaaatgcaaaagtgcaaacttgctagaagtaacagacaaactagaagtg 19034443  T
Q  227 aaaggtaatttcttttgtttagaaaaatgacatatctcacaagtaccattgtgatcaaaagtaagactaggataaatttgagacatgtgagataatctct 326  Q
    |||||||||||||||||||| | |||||||||||| |||||| || |||| ||||||||||||| ||||||||| | ||||||||| | ||| | | |||    
T  19034442 aaaggtaatttcttttgttttgcaaaatgacatatgtcacaaatagcattatgatcaaaagtaaaactaggatataattgagacatataagaaagtgtct 19034343  T
Q  327 tatgagatacatgacctaac 346  Q
    ||||||||||||||||||||    
T  19034342 tatgagatacatgacctaac 19034323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 186
Target Start/End: Complemental strand, 16986660 - 16986511
Alignment:
Q  36 aatgaaatttttgacatactgagaaacttcagacttagattttaaaagaacaatccaaacaaatccacaataatcatcaattatgagtaagaaagtatct 135  Q
    ||||||||||||||||| |||||||||||||||||||||||| || | ||| ||||||||| |||  | ||| |||||||  ||| ||||||||||||||    
T  16986660 aatgaaatttttgacatgctgagaaacttcagacttagatttcaataaaactatccaaacatatctgctatagtcatcaagaatg-gtaagaaagtatct 16986562  T
Q  136 atgattatgtacatatgtagtagataagggaccccaaatatcaaagtgtaa 186  Q
    ||||||||| | | ||||  | ||||| |||||||||||||||||||||||    
T  16986561 atgattatggatagatgttatggataaaggaccccaaatatcaaagtgtaa 16986511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 22177195 - 22177253
Alignment:
Q  121 agtaagaaagtatctatgattatgtacatatgtagtagataagggaccccaaatatcaa 179  Q
    ||||||||||||||| |||  ||||||| ||| | ||||||| ||||||||||||||||    
T  22177195 agtaagaaagtatctgtgaccatgtacagatgcaatagataatggaccccaaatatcaa 22177253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 40 - 316
Target Start/End: Original strand, 26466981 - 26467256
Alignment:
Q  40 aaatttttgacatactgagaaacttcagacttagattttaaaagaacaatccaaacaaatccacaataatcatcaattatgagtaagaaagtatctatga 139  Q
    |||||||||||||  |||||||||||| | |||||||| || | ||||||||||| ||||   | ||||||||||| ||| ||||||||||||||| |||    
T  26466981 aaatttttgacatgttgagaaacttcatatttagatttcaacaaaacaatccaaaaaaatatgctataatcatcaagtat-agtaagaaagtatctgtga 26467079  T
Q  140 ttatgtacatatgtagtagataagggaccccaaatatcaaagtgtaaaagttcaaatttgctagattcaatagatagactagaagtaaaaggtaatttct 239  Q
    |||||||   |||||  || |||||| ||||||||||||||||||||||| |||||||| |||||  ||| ||| | |||||  |  |||| |||||| |    
T  26467080 ttatgtatggatgtaacagctaaggggccccaaatatcaaagtgtaaaagctcaaatttactagaagcaacagaaacactagtggggaaagataattttt 26467179  T
Q  240 tttgtttagaaaaatgacatatctcacaagtaccattgtgatcaaaagtaagactaggataaatttgagacatgtga 316  Q
    ||||||| | ||| ||||| || ||||| ||  ||| || ||||| ||| ||| |||||||||  ||||||||||||    
T  26467180 tttgttttgcaaattgacagatatcacaggtggcatggttatcaacagtgagagtaggataaagatgagacatgtga 26467256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 258 - 346
Target Start/End: Complemental strand, 30584081 - 30583993
Alignment:
Q  258 atatctcacaagtaccattgtgatcaaaagtaagactaggataaatttgagacatgtgagataatctcttatgagatacatgacctaac 346  Q
    |||| |||||||||  ||| ||||||||||||||||||||||| | ||||||||| |||||||||||| ||||||||||||| ||||||    
T  30584081 atatgtcacaagtagtattatgatcaaaagtaagactaggatatagttgagacatatgagataatctcatatgagatacatgtcctaac 30583993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 23957114 - 23957080
Alignment:
Q  164 ggaccccaaatatcaaagtgtaaaagttcaaattt 198  Q
    |||||||||||||||||||||||||| ||||||||    
T  23957114 ggaccccaaatatcaaagtgtaaaagctcaaattt 23957080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 36 - 204
Target Start/End: Original strand, 21809294 - 21809461
Alignment:
Q  36 aatgaaatttttgacatactgagaaacttcagacttagattttaaaagaacaatccaaacaaatccacaataatcatcaattatgagtaagaaagtatct 135  Q
    ||||||||||||||||| |||||||||||||||||||||||| || | ||| ||||||||| ||| || ||| |||||||  ||| ||||||||||||||    
T  21809294 aatgaaatttttgacatgctgagaaacttcagacttagatttcaataaaactatccaaacatatctactatagtcatcaagaatg-gtaagaaagtatct 21809392  T
Q  136 atgattatgtacatatgtagtagataagggaccccaaatatcaaagtgtaaaagttcaaatttgctaga 204  Q
    ||||||||| | | ||||  | ||||| ||||||||||||||||||||||| |  |||||||| |||||    
T  21809393 atgattatgaatagatgttatggataaaggaccccaaatatcaaagtgtaacaactcaaatttactaga 21809461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 271
Target Start/End: Complemental strand, 28017206 - 28017099
Alignment:
Q  164 ggaccccaaatatcaaagtgtaaaagttcaaatttgctagattcaatagatagactagaagtaaaaggtaatttcttttgtttagaaaaatgacatatct 263  Q
    |||||||||||||||| ||||||||||||||||||   |    |||||||| |||| |||  | ||||||||||  |||| |||| |||||||||||| |    
T  28017206 ggaccccaaatatcaaggtgtaaaagttcaaatttagaactagcaatagattgactggaatgataaggtaattttctttgcttagcaaaatgacatatgt 28017107  T
Q  264 cacaagta 271  Q
    ||||||||    
T  28017106 cacaagta 28017099  T

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Target: scaffold0138 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 15987 - 15882
Alignment:
Q  40 aaatttttgacatactgagaaacttcagacttagattttaaaagaacaatccaaacaaatccacaataatcatcaattatgagtaagaaagtatctatga 139  Q
    ||||||||||||| ||||||||||||||| || |||||||| | ||||| ||||||||||| || ||| |||||||  || |||||| ||||||||||||    
T  15987 aaatttttgacatgctgagaaacttcagattttgattttaacaaaacaaaccaaacaaatctactatagtcatcaagaat-agtaaggaagtatctatga 15889  T
Q  140 ttatgta 146  Q
    |||||||    
T  15888 ttatgta 15882  T

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Target: scaffold1416 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1416
Description:

Target: scaffold1416; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 271
Target Start/End: Original strand, 1561 - 1668
Alignment:
Q  164 ggaccccaaatatcaaagtgtaaaagttcaaatttgctagattcaatagatagactagaagtaaaaggtaatttcttttgtttagaaaaatgacatatct 263  Q
    |||||||||||||||| ||||||||||||||||||   |    |||||||| |||| |||  | ||||||||||  |||| |||| |||||||||||| |    
T  1561 ggaccccaaatatcaaggtgtaaaagttcaaatttagaactagcaatagattgactggaatgataaggtaattttctttgcttagcaaaatgacatatgt 1660  T
Q  264 cacaagta 271  Q
    ||||||||    
T  1661 cacaagta 1668  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 270
Target Start/End: Original strand, 4646270 - 4646455
Alignment:
Q  84 aacaatccaaacaaatccacaataatcatcaattatgagtaagaaagtatctatgattatgtacatatgtagtagataagggaccccaaatatcaaagtg 183  Q
    ||||||||| ||||||  || ||||||||||| ||| ||| ||||| |||||||||||||| ||| | ||| | || || || |||||||||| ||| ||    
T  4646270 aacaatccagacaaatatactataatcatcaagtat-agtgagaaaatatctatgattatggacaaaagtaatggacaaagggccccaaatataaaaatg 4646368  T
Q  184 taaaagttcaaatttgctagattcaatagatagactagaagtaaaaggtaatttcttttgtttagaaaaatgacatatctcacaagt 270  Q
     || |||||||| |||||| |  ||| | | | ||||   ||||||||||| ||||||||| ||  |||||| ||||| ||||||||    
T  4646369 caatagttcaaacttgctacaagcaacatacaaactatttgtaaaaggtaacttcttttgtctaacaaaatggcatatatcacaagt 4646455  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 12285327 - 12285269
Alignment:
Q  121 agtaagaaagtatctatgattatgtacatatgtagtagataagggaccccaaatatcaa 179  Q
    ||||||||||||||| |||  ||||||| ||| | ||||||| ||||||||||||||||    
T  12285327 agtaagaaagtatctgtgaccatgtacagatgcaatagataatggaccccaaatatcaa 12285269  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 19586964 - 19587022
Alignment:
Q  121 agtaagaaagtatctatgattatgtacatatgtagtagataagggaccccaaatatcaa 179  Q
    ||||||||||||||| |||  ||||||| ||| | ||||||| ||||||||||||||||    
T  19586964 agtaagaaagtatctgtgaccatgtacagatgcaatagataatggaccccaaatatcaa 19587022  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 23376896 - 23376928
Alignment:
Q  167 ccccaaatatcaaagtgtaaaagttcaaatttg 199  Q
    ||||||||||| |||||||||||||||||||||    
T  23376896 ccccaaatatctaagtgtaaaagttcaaatttg 23376928  T

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Target: scaffold0329 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 11036 - 10978
Alignment:
Q  121 agtaagaaagtatctatgattatgtacatatgtagtagataagggaccccaaatatcaa 179  Q
    ||||||||||||||| |||  ||||||| ||| | ||||||| ||||||||||||||||    
T  11036 agtaagaaagtatctgtgaccatgtacagatgcaatagataatggaccccaaatatcaa 10978  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 52777707 - 52777649
Alignment:
Q  121 agtaagaaagtatctatgattatgtacatatgtagtagataagggaccccaaatatcaa 179  Q
    ||||||||||||||| |||  ||||||| ||| | ||||||| ||||||||||||||||    
T  52777707 agtaagaaagtatctgtgaccatgtacagatgcaatagataatggaccccaaatatcaa 52777649  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 30756266 - 30756294
Alignment:
Q  157 agataagggaccccaaatatcaaagtgta 185  Q
    |||||||||||||||||||||||||||||    
T  30756266 agataagggaccccaaatatcaaagtgta 30756294  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 30763718 - 30763746
Alignment:
Q  157 agataagggaccccaaatatcaaagtgta 185  Q
    |||||||||||||||||||||||||||||    
T  30763718 agataagggaccccaaatatcaaagtgta 30763746  T

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